Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F52H3.6
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Query: F52H3.6 CE03402 serine\/threonine specific protein phosphatase status:Partially_confirmed TR:Q27501 protein_id:CAA91326.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Metallophos Calcineurin-like phosphoesterase 145.6 9e-40 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Metallophos 1/1 53 248 .. 1 124 [] 145.6 9e-40
Alignments of top-scoring domains:
Metallophos: domain 1 of 1, from 53 to 248: score 145.6, E = 9e-40
*->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
++i+v+gD+Hg++ dll++++ ++ +++ ++lflGD+vdrg++ lev
F52H3.6 53 APIAVCGDIHGQYTDLLRIFNRCsFpPDQNYLFLGDYVDRGRQQLEV 99
llllfalklkapgpvylvrGNHDfdsgnsvy..............welfl
++ll+a+k+++p++++++rGNH+++s+n+ y++++ + ++ + f+
F52H3.6 100 ICLLMAYKIRYPNRFFILRGNHECASINRTYgfydeckrryslalYNDFQ 149
eef.lllla.lvdgkillvHgglspd........................
++f+ l+l+ + g+i+++Hggls ++ + ++ ++++++ +
F52H3.6 150 NLFnHLPLCaMISGRIFCMHGGLSQKlvswtqlaeitrpfdppnnslamd 199
............................leellk.ngvdlvirGHtH.p<
+ +++++ ++ +++++ + + + + ++ ++ ++dl++rGH+ +
F52H3.6 200 llwadpennmtgwaessrgvsqifgadvVKDFTEkMNIDLIARGHQVvQ 248
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F52H3.6 - -