Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F52H3.6
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Query:  F52H3.6  CE03402   serine\/threonine specific protein phosphatase status:Partially_confirmed TR:Q27501 protein_id:CAA91326.1

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
Metallophos Calcineurin-like phosphoesterase            145.6      9e-40   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Metallophos   1/1      53   248 ..     1   124 []   145.6    9e-40

Alignments of top-scoring domains:
Metallophos: domain 1 of 1, from 53 to 248: score 145.6, E = 9e-40
                   *->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
                      ++i+v+gD+Hg++ dll++++ ++ +++ ++lflGD+vdrg++ lev
     F52H3.6    53    APIAVCGDIHGQYTDLLRIFNRCsFpPDQNYLFLGDYVDRGRQQLEV 99

                   llllfalklkapgpvylvrGNHDfdsgnsvy..............welfl
                   ++ll+a+k+++p++++++rGNH+++s+n+ y++++  +  ++   +  f+
     F52H3.6   100 ICLLMAYKIRYPNRFFILRGNHECASINRTYgfydeckrryslalYNDFQ 149

                   eef.lllla.lvdgkillvHgglspd........................
                   ++f+ l+l+  + g+i+++Hggls    ++    +  ++ ++++++   +
     F52H3.6   150 NLFnHLPLCaMISGRIFCMHGGLSQKlvswtqlaeitrpfdppnnslamd 199

                   ............................leellk.ngvdlvirGHtH.p<
                     + +++++  ++ +++++ +   + + + ++ ++ ++dl++rGH+  +
     F52H3.6   200 llwadpennmtgwaessrgvsqifgadvVKDFTEkMNIDLIARGHQVvQ  248

                   -*

     F52H3.6     -    -



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