Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F52H3.1
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Query: F52H3.1 CE03397 locus:let-268 procollagen-lysine,2-oxoglutarate 5-dioxygenase precusor status:Partially_confirmed SW:Q20679 protein_id
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily 54.7 5.1e-14 1
Mss4 Mss4 protein 6.7 1.9 1
Glycos_transf_2 Glycosyl transferase 5.1 2.3 1
Orf-D Borrelia orf-D family 3.8 8.7 1
DUF24 Transcriptional regulator 3.6 8.2 1
ATP-sulfurylase ATP-sulfurylase 2.8 4.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Orf-D 1/1 1 24 [. 1 26 [. 3.8 8.7
DUF24 1/1 79 91 .. 80 92 .] 3.6 8.2
ATP-sulfurylase 1/1 382 399 .. 332 349 .] 2.8 4.2
Glycos_transf_2 1/1 357 465 .. 69 149 .] 5.1 2.3
Mss4 1/1 545 566 .. 1 22 [. 6.7 1.9
2OG-FeII_Oxy 1/1 639 730 .] 1 121 [] 54.7 5.1e-14
Alignments of top-scoring domains:
Orf-D: domain 1 of 1, from 1 to 24: score 3.8, E = 8.7
*->iKnlkfLflLlillllsCsTIAsLPE<-*
++ l+fL L +ll +TI LPE
F52H3.1 1 MRVLPFLLPLIPVLL--ATTITDLPE 24
DUF24: domain 1 of 1, from 79 to 91: score 3.6, E = 8.2
*->lckWGeeyleped<-*
l++W+e+y++++d
F52H3.1 79 LSDWIEKYKDASD 91
ATP-sulfurylase: domain 1 of 1, from 382 to 399: score 2.8, E = 4.2
*->FsrPEVvkiLveyyksla<-*
Fs P+V k L++y k ++
F52H3.1 382 FSEPKVIKDLIQYSKTYD 399
Glycos_transf_2: domain 1 of 1, from 357 to 465: score 5.1, E = 2.3
*->ArNaGlkhAtGd.ydyiaflDaDdev.pd.wlekllellekngadiv
ArN++++ + + ++ +++D D ++++ + ++ l+++ + ++++i+
F52H3.1 357 ARNEAIEWNKARnVEFAFLMDGDAYFsEPkVIKDLIQYSKTYDVGII 403
ig.rv.in.e.n.kgr.............lngk.l.r.l.l.v.fli.sn
+ + ++++ ++++ ++ ++++ + ++++ ++ + +i+s
F52H3.1 404 APmIGqPGkLfTnFWGaiaangyyarsedYMAIvKgNrVgYwNvPFItSA 453
alyrrealekll<-*
l+++e le +
F52H3.1 454 VLFNKEKLEAMK 465
Mss4: domain 1 of 1, from 545 to 566: score 6.7, E = 1.9
*->ndeevlnqerqdrVdlPlmeqk<-*
+e v +q ++d+ d+Plm+ +
F52H3.1 545 EPEHVVDQACPDVYDFPLMSER 566
2OG-FeII_Oxy: domain 1 of 1, from 639 to 730: score 54.7, E = 5.1e-14
*->naeslrvnyYppvPcpqelaskktsspdlglglgpHtDdenrilTil
++++ v +Y p+++ +l+pH+D+++ + i
F52H3.1 639 ESNMMFVVRYK---------------PEEQPSLRPHHDASTFSIDIA 670
lqlsdvdekdggggLqfpkdggwidvppgPg.alvvniGdllqvlsnGry
l+ ++ d ++ggg + + + ++ p + ++++++ l
F52H3.1 671 LNKKGRD--YEGGGVRYIRYN---CTVPADEvGYAMMFPGRL-------- 707
ksvlHrVlpntgegeRiSiafflrp<-*
++lH++l++t +g+R+++++f++p
F52H3.1 708 -THLHEGLATT-KGTRYIMVSFINP 730