hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F53A3.7
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Query:  F53A3.7  CE23764    status:Partially_confirmed TR:Q9TXQ4 protein_id:AAF02170.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
zf-DNL   DNL zinc finger                                152.7    3.5e-42   1
CCG      Cysteine-rich domain                             5.9        4.9   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
CCG        1/1      62    75 ..    55    68 .]     5.9      4.9
zf-DNL     1/1      35   102 ..     1    68 []   152.7  3.5e-42

Alignments of top-scoring domains:
CCG: domain 1 of 1, from 62 to 75: score 5.9, E = 4.9
                   *->aivtaCpgCllqlk<-*
                      +++++C+gC++++
     F53A3.7    62    VVIVTCSGCHNHHI    75

zf-DNL: domain 1 of 1, from 35 to 102: score 152.7, E = 3.5e-42
                   *->mqlaFTCkvCntRst.ktiskqAYekGvViVqCpGCknhHliaDNLg
                      ++l++TCkvCn+R+++kt++k++YekGvViV+C+GC+nhH+iaDN+g
     F53A3.7    35    LSLSYTCKVCNSREGpKTFAKSSYEKGVVIVTCSGCHNHHIIADNIG 81

                   lFsdlkgkRniesslaakgeev<-*
                   +F+d+kgk nie++l+++ge+v
     F53A3.7    82 WFEDFKGK-NIEDHLKTRGEAV    102

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