Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F53A9.10
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Query: F53A9.10 CE02761 locus:tnt-2 status:Partially_confirmed TR:Q20694 protein_id:AAC46565.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Troponin Troponin 192.0 9.4e-54 2
BolA BolA-like protein 5.7 2.3 1
Transglycosyl Transglycosylase 3.9 6.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Transglycosyl 1/1 110 125 .. 145 160 .. 3.9 6.6
Troponin 1/2 128 213 .. 1 113 [. -34.8 5.9e+04
Troponin 2/2 214 406 .. 1 186 [] 219.3 5.7e-62
BolA 1/1 400 421 .. 1 24 [. 5.7 2.3
Alignments of top-scoring domains:
Transglycosyl: domain 1 of 1, from 110 to 125: score 3.9, E = 6.6
*->KslkdLtlaEaAlLAG<-*
K++++ t aEaA+LA+
F53A9.10 110 KPPAEMTEAEAAMLAA 125
Troponin: domain 1 of 2, from 128 to 213: score -34.8, E = 5.9e+04
*->KrmlkslmekekknfqvtekgsaAltlglqkAaeelekEqeekeeEk
++ ++++ + e ++ ++e+ e++
F53A9.10 128 RHEEEEAA--------------------KLLDYEQRRVLEKEQMEQE 154
eraLaeRlieplqlegaeqlakLqElckelharidEekveeEkYDlEkrv
+r+L+e e++++e++e++++ E+ ++ dEe+++++++D ++++
F53A9.10 155 LRELKEK-QEKRRAEREEDERQFAERRRQ-----DEERRRKDEEDRKAKA 198
ekqekelkdLnekvrQ<-*
+ + +++ + + rQ
F53A9.10 199 DAEKARKNEEKSR-RQ 213
Troponin: domain 2 of 2, from 214 to 406: score 219.3, E = 5.7e-62
*->Krmlkslmekek.....knfqvtekgsaAltlglqkAaeelekEqee
++m s+ +++++ +++knf+v++kg++A+++g++++ +++e ++e
F53A9.10 214 QMMAGSFAGAAVgapggKNFTVSNKGDQAANFGNLAQGAKAEGLTKE 260
keeEkeraLaeRlieplqlegaeqlakLqElckelharidEekveeEkYD
++e+ +ra+ + ++++++++++++ ++L+E++k +hari+ k+e+EkYD
F53A9.10 261 QQEDAKRAFLNVVCKAQDVSTLMP-NDLKERIKGIHARIV--KLEGEKYD 307
lEkrvekqekelkdLnekvrQvlRaadlrgKfkkpalksekpkvrqsada
lEkr+e+qe++lk+Lne++rQv+R+++l++++++++ s+++++++++
F53A9.10 308 LEKRRERQEYDLKELNERQRQVARNKALKKGLDPEEAASSVHPPKITTAS 357
mlkallgsKhKpla.....idhvsmDkledlraekkeaesLRanlKeVk<
+++++++++++++++ ++++v++ +++++++++++ae++R++++e++
F53A9.10 358 KFDRQTDRRSYGDRrylfeNPFVKPAYTLVHGTSRPPAEWGRKENEELE 406
-*
F53A9.10 - -
BolA: domain 1 of 1, from 400 to 421: score 5.7, E = 2.3
*->kleeqilqpvilevlPneshvhvv<-*
k++e+ l++++++++ ++ +v+ v
F53A9.10 400 KENEE-LEQIRKNLE-PPKYVEQV 421