Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F53C11.8
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Query: F53C11.8 CE10918 Yeast hypothetical protein YPL247C like status:Partially_confirmed TR:Q93758 protein_id:CAB02115.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 63.7 2.5e-16 4
DUF209 Uncharacterized BCR, YhhW family COG1741 5.0 3.5 1
GPW_gp25 GPW / gp25 family 4.4 5.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GPW_gp25 1/1 78 112 .. 61 102 .] 4.4 5.7
WD40 1/4 104 144 .. 1 39 [] 1.4 1.4e+02
WD40 2/4 166 194 .. 11 39 .] 4.7 15
WD40 3/4 210 251 .. 1 39 [] 21.5 0.00025
WD40 4/4 302 341 .. 1 39 [] 36.1 1.9e-08
DUF209 1/1 329 343 .. 225 240 .] 5.0 3.5
Alignments of top-scoring domains:
GPW_gp25: domain 1 of 1, from 78 to 112: score 4.4, E = 5.7
*->rLlaVtvtevkdgrtvllditgsrvdtGepitlegPFYVipl<-*
++++V+v+++++++ ++i+ ++ tGe +++ +p
F53C11.8 78 TVSDVSVNPCAANK---VSIVQLKDETGELVETAS----FPM 112
WD40: domain 1 of 4, from 104 to 144: score 1.4, E = 1.4e+02
*->geclatl.gHtspvtcvafspd....sgpylasgSrDgtiklWd<-*
+a+++ p ++v f pd+++ ++ ++a+ S+ +++lW
F53C11.8 104 LVETASFpME-FPANAVGFIPDpdnvYPDLIATTSD--CLRLWR 144
WD40: domain 2 of 4, from 166 to 194: score 4.7, E = 15
*->spvtcvafspdsgpylasgSrDgtiklWd<-*
s+ t+ +++ +++y+ +S D t+ ++d
F53C11.8 166 SALTSFDWNELEPRYIGVSSVDTTCTIYD 194
WD40: domain 3 of 4, from 210 to 251: score 21.5, E = 0.00025
*->geclatl.gHtspvtcvafspd..sgpylasgSrDgtiklWd<-*
++++ l +H +pv ++ f+ ++++ ++a+ ++Dg+ +++d
F53C11.8 210 FTLKTQLiAHDKPVHDIEFAKIngGRDHFATVGADGSARMFD 251
WD40: domain 4 of 4, from 302 to 341: score 36.1, E = 1.9e-08
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
++ l l+ Ht+pv+ +a++p+s+++++++++D +Wd
F53C11.8 302 CNILCRLrNHTGPVNGIAWAPHSPHHICTAGDDSQALIWD 341
DUF209: domain 1 of 1, from 329 to 343: score 5.0, E = 3.5
*->ltAdspstEvLLfDLP<-*
+tA +s +L++DL
F53C11.8 329 CTAGDDS-QALIWDLQ 343