Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F53F4.5
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Query: F53F4.5 CE30676 locus:fmo-14 dimethylaniline monoxygenase status:Partially_confirmed TN:CAB01214 protein_id:CAB01214.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FMO-like Flavin-binding monooxygenase-like 464.4 9.2e-136 2
pyr_redox Pyridine nucleotide-disulphide oxidore 27.3 4.3e-07 2
PFL Pyruvate formate lyase 7.1 0.18 1
TrkA-N TrkA-N domain 6.6 2.4 1
DAO FAD dependent oxidoreductase 6.6 0.77 1
pp-binding Phosphopantetheine attachment site 5.3 7.8 1
UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase 5.0 5.9 1
Herpes_UL20 Herpesvirus egress protein UL20 3.9 3.3 1
Thi4 Thi4 family 2.5 4.9 1
Hemagglutinin Hemagglutinin 0.8 3.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UDPG_MGDP_dh_N 1/1 1 9 [. 1 9 [. 5.0 5.9
DAO 1/1 1 13 [. 1 13 [. 6.6 0.77
TrkA-N 1/1 2 27 .. 1 26 [. 6.6 2.4
Thi4 1/1 3 37 .. 30 66 .. 2.5 4.9
pyr_redox 1/2 2 44 .. 1 59 [. 20.0 5.4e-05
FMO-like 1/2 2 108 .. 1 110 [. 143.6 3.6e-39
Hemagglutinin 1/1 136 145 .. 1 10 [. 0.8 3.2
pyr_redox 2/2 101 201 .. 95 199 .. 6.7 0.36
pp-binding 1/1 255 280 .. 43 68 .] 5.3 7.8
Herpes_UL20 1/1 440 452 .. 190 202 .] 3.9 3.3
FMO-like 2/2 134 488 .. 143 503 .. 321.7 8.7e-93
PFL 1/1 465 491 .. 1 27 [. 7.1 0.18
Alignments of top-scoring domains:
UDPG_MGDP_dh_N: domain 1 of 1, from 1 to 9: score 5.0, E = 5.9
*->mkIaViGlG<-*
m+++V+G+G
F53F4.5 1 MRVCVVGAG 9
DAO: domain 1 of 1, from 1 to 13: score 6.6, E = 0.77
*->mdvvVIGgGViGl<-*
m+v V+G+G++Gl
F53F4.5 1 MRVCVVGAGASGL 13
TrkA-N: domain 1 of 1, from 2 to 27: score 6.6, E = 2.4
*->hfiviGlGrvGrsvakeLleeGhdVv<-*
+++v+G+G+ G+ +k +eeG dVv
F53F4.5 2 RVCVVGAGASGLPAIKACIEEGLDVV 27
Thi4: domain 1 of 1, from 3 to 37: score 2.5, E = 4.9
*->VvIVGAGpSGLtAAYyLAkkRPglKVaiiErslSpGG<-*
V +VGAG SGL A ++ gl V+ +E+ +GG
F53F4.5 3 VCVVGAGASGLPAIKACIEE--GLDVVCFEKTADIGG 37
pyr_redox: domain 1 of 2, from 2 to 44: score 20.0, E = 5.4e-05
*->dvvIIGgGpAGlaAAiraaragflGrkrlkvalvEkepplkrgtlGG
+v+++G+G+ Gl A + + + +G l+v+++Ek + +GG
F53F4.5 2 RVCVVGAGASGLPAIKACIE---EG---LDVVCFEKT-----ADIGG 37
TClNvgciprkp<-*
+ +r++
F53F4.5 38 -----LWNYRPG 44
FMO-like: domain 1 of 2, from 2 to 108: score 143.6, E = 3.6e-39
*->aKkVAVIGAGVSGLaSiKCCLeEGILEPtCFERSdDIGGLWrFtEnv
+V V+GAG SGL iK C eEG L+++CFE+++DIGGLW
F53F4.5 2 --RVCVVGAGASGLPAIKACIEEG-LDVVCFEKTADIGGLWNYRPGQ 45
EeGrASiYKSvvtNvsKEMsCYSDFPfPedyPNFmhnskilEYLrmfAke
++ + S v N+sKEM+ YSDFP P + NFmh+ k+ EY++ +A++
F53F4.5 46 KDIGGTVMESTVVNTSKEMMAYSDFPPPAEFANFMHHTKVIEYIKSYAEH 95
FdLLKYIQFkTtV<-*
F+L I+F T V
F53F4.5 96 FGLMDKIRFNTPV 108
Hemagglutinin: domain 1 of 1, from 136 to 145: score 0.8, E = 3.2
*->ICiGYhannS<-*
+C+G+ha S
F53F4.5 136 LCTGHHAEPS 145
pyr_redox: domain 2 of 2, from 101 to 201: score 6.7, E = 0.36
*->evllgtevt.ldkknkvvi.tvlgdgetltydkliiATG..arprip
+++ +t v+++ ++++ + + l +ge+ +++kli++TG++a+p +p
F53F4.5 101 KIRFNTPVKrISRNEQNKYiVSLQNGEIEEFEKLILCTGhhAEPSYP 147
pipGvpgflfaglegvfglrtsddAlalrevpkgkrvvVvGGGyIGlElA
++ +l++++g+ + + + ++gk v G G+ +l+ A
F53F4.5 148 ELK--------NLDNFKGKVVHAYDYTNTSGYEGKDVFLLGIGNSALDIA 189
aalarlGaeVTv<-*
a++++ VT+
F53F4.5 190 VDIAKIAKSVTI 201
pp-binding: domain 1 of 1, from 255 to 280: score 5.3, E = 7.8
*->eeelGvelpdtdlfehpTiraLaeyl<-*
++ +G++ + + + +hpT+++ + l
F53F4.5 255 HDVYGLRPDHRFFQQHPTVNDALANL 280
Herpes_UL20: domain 1 of 1, from 440 to 452: score 3.9, E = 3.3
*->FllPRlWtRaiLk<-*
F+ PR+W++ ++
F53F4.5 440 FFYPRFWMKLFMG 452
[output cut off at A = 10 top alignments]