hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F53H4.1
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Query:  F53H4.1  CE11028  locus:csb-1 excision repair protein ERCC-6 like status:Partially_confirmed TR:Q93781 protein_id:CAB03135.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
SNF2_N     SNF2 family N-terminal domain                282.4    5.9e-81   2
helicase_C Helicase conserved C-terminal domain          74.1    1.4e-19   2
PCP        Peridinin-chlorophyll A binding protein        6.9       0.35   2
3-alpha    3-alpha domain                                 6.4        4.2   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PCP          1/2     412   430 ..   134   152 .]     6.4      0.5
SNF2_N       1/2     197   504 ..     1   356 []   261.6    1e-74
helicase_C   1/2     562   635 ..     1    72 []    71.0  1.1e-18
3-alpha      1/1     786   811 ..    24    49 .]     6.4      4.2
PCP          2/2    1260  1277 ..   135   152 .]     0.5       34
SNF2_N       2/2    1220  1373 ..   194   356 .]    22.6  2.9e-05
helicase_C   2/2    1475  1494 ..    43    62 ..     3.1       24

Alignments of top-scoring domains:
PCP: domain 1 of 2, from 412 to 430: score 6.4, E = 0.5
                   *->NGedAekAYegFlAltsaV<-*
                      ++e A kAYe  +Al  aV
     F53H4.1   412    SPEAAAKAYECLVALHIAV    430

SNF2_N: domain 1 of 2, from 197 to 504: score 261.6, E = 1e-74
                   *->YQleGvnWLislyknlvkkendscglggILADEMGLGKTlQtIslla
                      +Q+eGv+WL    +           +ggILADEMGLGKT+Q++ +l
     F53H4.1   197    FQQEGVEWLQKKTDH---------RSGGILADEMGLGKTIQSVVFLR 234

                   yllelkpkae.k.rigpfLvVcPlStldnWlnEfekWapddlnivvyygd
                    ++e     ++++++  +L+Vc +S++ +W  E+ +W+p   +++ ++ +
     F53H4.1   235 SIQETARTHYkTtGLDTALIVCHVSIIAQWIKELNQWFP-KARVFLLHSH 283

                   gnsrdqi.......rkdellrnflkdggrlkydvlitsYeiirkNkLlkd
                   ++   q++  ++  rk +  r+   dg      +++t+Y++  k
     F53H4.1   284 CSTGRQEdyvgsifRKLQRRRKEYPDG-----AIILTTYSLFTK-----L 323

                   kdeLkklginwdylilDEgHHrlKNedSklrkskalnklkhtrnRLlLTG
                   k+ + k  + w+ +ilDEg H ++Ne+ k   s+a++kl  t+ R +LTG
     F53H4.1   324 KKPIVK--HLWQVVILDEG-HYIRNENTKC--SIAMRKLM-TTQRFILTG 367

                   TPlQNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpilegrdsa
                   TP QN+L+E+w L++F+ Pg++++        ++F  +f   i+ g +
     F53H4.1   368 TPFQNRLSEFWKLVDFVHPGRLSDS-------ATFHRNFTHIINAGAN-- 408

                   vLadaslaLrrkkdveeglkllnrLhkilkpflLRRlkkdveksLpppeK
                     ++ s      ++  +++++l +Lh  +kp +LRRl +d    L+ peK
     F53H4.1   409 --LNCS-----PEAAAKAYECLVALHIAVKPLILRRLQEDHKEVLQLPEK 451

                   teyvlfcklsklQkelYkkflkgeskdvkaindserreggkeknegksrl
                   +e+vl c+lsk Q++lY+ + +  s++v+ i ++              +
     F53H4.1   452 QEIVLSCELSKRQRRLYMEYGN--SHQVNEIIERR------------LKA 487

                   lnlimqLrKicNfHPyLf<-*
                   + +i +L  icN HP+++
     F53H4.1   488 FVGINHLTNICN-HPGIY    504

helicase_C: domain 1 of 2, from 562 to 635: score 71.0, E = 1.1e-18
                   *->gikvarlhGglsqeeReeilekFrngks..kvLvaTdvaarGiDipd
                      gik+++l+G  s++ R +i++kF ++ s +++L +T+++++G+++++
     F53H4.1   562    GIKCVSLTGADSAAARPKIIKKFEDDVSikVFLMTTRAGGLGLNLTC 608

                   vnlVInydlpwnpesyiQRiGRaGRaG<-*
                   +n VI++d++wnp+ + Q+  R++R+G
     F53H4.1   609 ANKVIIFDPDWNPQADNQAKNRIYRMG    635

3-alpha: domain 1 of 1, from 786 to 811: score 6.4, E = 4.2
                   *->rlLalpalLspswrktarKrlakgkv<-*
                      +lL  ++ L+ +w+  ++K+l k+++
     F53H4.1   786    SLLHTEGRLAHTWKQVFHKQLRKTLK    811

PCP: domain 2 of 2, from 1260 to 1277: score 0.5, E = 34
                   *->GedAekAYegFlAltsaV<-*
                      +e+A  AYe  +Al  a
     F53H4.1  1260    PEEASTAYECIVALHVAL    1277

SNF2_N: domain 2 of 2, from 1220 to 1373: score 22.6, E = 2.9e-05
                   *->nLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpilegrdsavL
                      +L+Elw  ++F++Pg+++++       k+F+ +f+n i  g ++
     F53H4.1  1220    RLEELWWNVDFVFPGRLSDY-------KTFQTNFQNVIEIG-CR--- 1255

                   adaslaLrrkkdveeglkllnrLhkilkpflLRR.........lkkdvek
                   +da+      ++  ++++++ +Lh  lkp +L R  +++++     +++k
     F53H4.1  1256 LDAT-----PEEASTAYECIVALHVALKPLILSRliknpndwfCRREISK 1300

                   sLpppeKteyvlfcklsklQkelYkkflkg....eskdvkaindserreg
                         ++   +f+k + +Q  +++++++  +++ ++ +k+ + s+   +
     F53H4.1  1301 KEVE--HIKVRIFVKQYFEQTLFFQDIICPlskrQRRCLKIYKRSD---E 1345

                   gkeknegksrllnlimqLrKicNfHPyLf<-*
                   + ++++++s    ++ +L  ic+ HP++
     F53H4.1  1346 VQGILRQSSAACVGLKKLTDICD-HPGIH    1373

helicase_C: domain 2 of 2, from 1475 to 1494: score 3.1, E = 24
                   *->ipdvnlVInydlpwnpesyi<-*
                      ++ +n VI++d+ wnp+s++
     F53H4.1  1475    LKKANKVIIFDPEWNPDSDV    1494

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