Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F54A5.3a
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Query: F54A5.3a CE30804 status:Partially_confirmed TR:Q9TYT3 protein_id:AAC78222.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SH2 SH2 domain 86.8 7.9e-29 1
PID Phosphotyrosine interaction domain (PTB/PID) 20.4 0.00016 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PID 1/1 20 140 .. 1 133 [. 20.4 0.00016
SH2 1/1 211 283 .. 1 79 [] 86.8 7.9e-29
Alignments of top-scoring domains:
PID: domain 1 of 1, from 20 to 140: score 20.4, E = 0.00016
*->FeVkYLGsveVpkemrapskstRmqvareairrlreavKkpkakkik
+ YLGsv+V ++ + R+qv+ e+i+ +++ v a+ i+
F54A5.3a 20 -SATYLGSVPVVESINVMVSEMRVQVVSECIQHVAATVGVTAAREIN 65
.rskgssgerqag.tkidLsistdglklldekteaekevihehplrkISF
+++++ ge ++ + ++d++is +++k++ + +i hp + SF
F54A5.3a 66 pVVSRVIGEVKKEnFPVDINISSKMIKIIKQSR-----LIQRHPFSFFSF 110
iAvg.gDpdVdlraFayvrstddsliaadgatsrfaCHv<-*
A+g+ d ++ +F+y ia+ ++ ++CHv
F54A5.3a 111 GAQGqKGTD-TELMFGY--------IAKNKDGTDRRCHV 140
SH2: domain 1 of 1, from 211 to 283: score 86.8, E = 7.9e-29
*->WyhGkIsRkeAErlLlnpggkdGtFLvReSestpGdYtLSVrddgpr
WyhG++sR++A+ lL+ +G+FLvR+S+ tpG Y+LS r+ ++
F54A5.3a 211 WYHGNLSREDAQALLKT----EGDFLVRQSDHTPGKYVLSGRTAENE 253
VkHyrIqsldnggyyitggvkFssLpeLvehY<-*
kH I ++ +t +++Fs+++eL++++
F54A5.3a 254 HKH-LILLDNHN-RVRTRDRTFSNISELIDYH 283