Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F54C9.1
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Query: F54C9.1 CE02249 locus:iff-2 initiation factor 5A status:Confirmed SW:Q20751 protein_id:CAA90247.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
eIF-5a Eukaryotic initiation factor 5A hypusine, DN 121.6 1e-32 1
KOW KOW motif 33.4 3.1e-07 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
KOW 1/1 29 63 .. 1 40 [] 33.4 3.1e-07
eIF-5a 1/1 87 156 .. 1 72 [] 121.6 1e-32
Alignments of top-scoring domains:
KOW: domain 1 of 1, from 29 to 63: score 33.4, E = 3.1e-07
*->fkkGdvVrVisGpfkGkkGkVvevdpkk.G.HGslknrVvve<-*
++k+++V++ kG+++k+ve +++k+G+HG++k V+
F54C9.1 29 LRKNEHVMI-----KGRPCKIVEMSTSKtGkHGHAK--VHMV 63
eIF-5a: domain 1 of 1, from 87 to 156: score 121.6, E = 1e-32
*->nVkRreYQlldIqEDGfLsLmDlEsGEtKeDLkLPegdnLgkeIegl
+VkRreY l++I+ DG++sLmD+Es+E K+DLkLP + Lg I+++
F54C9.1 87 VVKRREYLLMAID-DGYCSLMDPESCEQKDDLKLPDTE-LGQQIRDA 131
feeGkGDllVsVisAmGeEaivrvK<-*
e+++G++lV+V+sA GeEai++ K
F54C9.1 132 YEKDEGSVLVQVVSAIGEEAILGWK 156