hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F54C9.5
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Query:  F54C9.5  CE02255  locus:rpl-5 60S ribosomal protein L5 status:Confirmed SW:P49405 protein_id:CAA90251.1

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N
--------       -----------                              -----    ------- ---
Ribosomal_L18p Ribosomal L18p/L5e family                273.3    3.2e-78   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Ribosomal_L18p   1/1      26   172 ..     1   146 []   273.3  3.2e-78

Alignments of top-scoring domains:
Ribosomal_L18p: domain 1 of 1, from 26 to 172: score 273.3, E = 3.2e-78
                   *->gkrrrrerrrlrvrrklkgtaerPRLvVrrSNkhiyAQiiddtkggt
                      gk+++++r+rl+v++k+k++++++RL+Vr++Nk+++AQ+ ++ ++g+
     F54C9.5    26    GKTDYYARKRLTVQDKNKYNTPKYRLIVRITNKDVVAQLAYSKIEGD 72

                   lvsAStlskeLkkyglkgggtNtaaAylvGlLiAeRalkklGLD.tYkGi
                   +v+AS++s+eL++yglk+g+tN+aaAy++GlL+A+R+lk++GLD+tYkG+
     F54C9.5    73 VVVASAYSHELPRYGLKVGLTNYAAAYATGLLLARRHLKTIGLDsTYKGH 122

                   eEvtGEdylvEaedgPrPFkavvvfDrgGytYHGRVfAlAdgArEaGLkf
                   eE+tGEdy+vE+e++++PFkav++++++++t+++++fA+++g  ++G+++
     F54C9.5   123 EELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINV 172

                   <-*

     F54C9.5     -     -

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