hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F54D1.4
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Query:  F54D1.4  CE20866  locus:nhr-7 nuclear hormone receptor status:Confirmed SW:Q20765 protein_id:CAB00862.3

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
zf-C4         Zinc finger, C4 type (two domains)        126.2    1.2e-36   1
Acyl_transf_2 Acyl transferase                            3.9        1.9   1
hormone_rec   Ligand-binding domain of nuclear hormon     3.5        4.1   1
Pox_polyA_pol Poxvirus poly(A) polymerase catalytic s     2.7        4.8   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
zf-C4           1/1       7    83 ..     1    77 []   126.2  1.2e-36
Pox_polyA_pol   1/1     260   285 ..     1    35 [.     2.7      4.8
hormone_rec     1/1     280   330 ..   105   155 ..     3.5      4.1
Acyl_transf_2   1/1     373   401 ..   266   294 .]     3.9      1.9

Alignments of top-scoring domains:
zf-C4: domain 1 of 1, from 7 to 83: score 126.2, E = 1.2e-36
                   *->elCkVCGDkASGyHYGvlTCEGCKGFFrRsiqknlviYsCkrnkdCv
                      ++C+VCGD  +  HYGvl+C GCKGFFrR+++   + Y C+++k+C+
     F54D1.4     7    RICAVCGDTPAKIHYGVLACFGCKGFFRRAVKDGRNKYVCRFEKNCE 53

                   IdKrnRnrCQyCRLkKCLeVGMskeaVrfg<-*
                   ++K  Rn+C+yCR++KCL VGM+ + Vr +
     F54D1.4    54 VTKFERNACRYCRFRKCLLVGMNPDYVRPD    83

Pox_polyA_pol: domain 1 of 1, from 260 to 285: score 2.7, E = 4.8
                   *->MNaaPdqntfPniilellreYLGRpPslneYhmlK<-*
                      +  +         i+++ ++YL  pPs+ eY +lK
     F54D1.4   260    LTQK---------IADVFETYLRKPPSIIEYSVLK    285

hormone_rec: domain 1 of 1, from 280 to 330: score 3.5, E = 4.1
                   *->EyalLkAIvLfnPsdvpgLsesarelveklqekylsaLlqycllnyp
                      Ey  LkA + ++  + + Ls+s  e ++  +e++++ L++ ++++++
     F54D1.4   280    EYSVLKAYIVLSA-ESTVLSNSLNESLSLARENLSELLFKVIKHSRN 325

                   d.sls<-*
                   ++s+s
     F54D1.4   326 KtSIS    330

Acyl_transf_2: domain 1 of 1, from 373 to 401: score 3.9, E = 1.9
                   *->ldvdiiEPdFEdLtiatvnERRlKneies<-*
                      +  dii P+  dL + t n R+l  ++ s
     F54D1.4   373    ILTDIINPEVSDLLLTTANCRKLSTQMGS    401

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