Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F54D1.5
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Query: F54D1.5 CE28563 locus:gtl-2 status:Partially_confirmed TR:Q20766 protein_id:CAB00861.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ion_trans Ion transport protein 47.3 1.2e-11 1
Rota_NSP3 Rotavirus non-structural protein NSP3 5.4 1.2 1
L1L_F9_C19 L1L/F9/C19 pox virus orf family 5.3 2.4 1
MCM MCM2/3/5 family 2.9 4.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Rota_NSP3 1/1 183 215 .. 1 32 [. 5.4 1.2
MCM 1/1 650 663 .. 604 617 .] 2.9 4.1
L1L_F9_C19 1/1 881 894 .. 224 237 .] 5.3 2.4
ion_trans 1/1 885 1086 .. 1 228 [] 47.3 1.2e-11
Alignments of top-scoring domains:
Rota_NSP3: domain 1 of 1, from 183 to 215: score 5.4, E = 1.2
*->esTqqsvesIinsaFeAAvaa.ltssLedmGis<-*
+ q + +Ii s + v+++++++L+++Gis
F54D1.5 183 KAAQTTGAWIITSGLDSGVVRhVAKALDEAGIS 215
MCM: domain 1 of 1, from 650 to 663: score 2.9, E = 4.1
*->DVeeAirLireslk<-*
DVeeA rL++ + k
F54D1.5 650 DVEEAKRLFDNAVK 663
L1L_F9_C19: domain 1 of 1, from 881 to 894: score 5.3, E = 2.4
*->lkpdeyryttflyv<-*
lkp y+++tf+y+
F54D1.5 881 LKPSKYEWITFIYT 894
ion_trans: domain 1 of 1, from 885 to 1086: score 47.3, E = 1.2e-11
*->ileildyvftviFtlEmllkiialgfklhsr...iprkYlrspwnil
e++ +++tv + +E + k+++ sr +++ + ++ +++ni
F54D1.5 885 KYEWITFIYTVTLSVEHIRKLMTSEG---SRineKVKVFYAKWYNIW 928
Dflvvlpslislilflsgggsvklirlreslflalse.vsygilsvlrll
+++l +l++++++l+++ + +++++ +ls+ +l
F54D1.5 929 TSAALLFFLVGYGFRLVPM---------------YRHsWGRVLLSFSNVL 963
RllRvLRllrllrrapglfefelrtlGWklqslgrslkslfnllllllll
++ ++ +l++ p l+++ +q+ +++ s++++++lll+
F54D1.5 964 FYMK---IFEYLSVHPL-----LGPY---IQMAAKMVWSMCYICVLLLVP 1002
lfifaiigvqlfggelnkcc....npingntnFdnfgeaflwlFqtlTte
l++f++ l + +++ + ++i++ + F +ge + + t+ e
F54D1.5 1003 LMAFGVNRQALTEPNVKDWHwllvRNIFYKPYFMLYGEVYAGEIDTCGDE 1052
GwgdimpdtlagtvlgkiyfvifiilggflllNlfiavi<-*
p +++ +++vif +++++lllNl+ia+
F54D1.5 1053 -GIRCFPG----YFIPPLLMVIFLLVANILLLNLLIAIF 1086