hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F54D10.7
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Query:  F54D10.7  CE19457    status:Partially_confirmed TR:Q9TZ84 protein_id:AAC68780.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
ubiquitin     Ubiquitin family                           43.9    8.9e-11   1
Flagellar_rod Paraflagellar rod protein                   2.7        8.3   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Flagellar_rod   1/1      92   113 ..     1    22 [.     2.7      8.3
ubiquitin       1/1     181   257 ..     1    83 []    43.9  8.9e-11

Alignments of top-scoring domains:
Flagellar_rod: domain 1 of 1, from 92 to 113: score 2.7, E = 8.3
                   *->leersrlkdalrrlkqecesdL<-*
                      l+ + ++k a  r k+e+ +dL
    F54D10.7    92    LDAIRSMKKAFAREKEEFSDDL    113

ubiquitin: domain 1 of 1, from 181 to 257: score 43.9, E = 8.9e-11
                   *->mkifVKtldgkgkvtdgstitlevepsdTVlelKekIedkegippeq
                       +i++ ++  +      s i++e+++ dT+ ++ +++ +  g++ ++
    F54D10.7   181    KNIKFNVILHG------SRIPMELDSLDTIYTVGMALLKHGGLALHR 221

                   QrLiyaGkvLreDdttLaeYniqegs.ftlhlvlrlr<-*
                   QrL+++ k+L + ++tL+e +i++gs +  h   + +
    F54D10.7   222 QRLMLNDKEL-QYNQTLEEAGIKDGSvIKQHTDEKCD    257

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