Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F54D5.1
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Query: F54D5.1 CE11062 locus:pcs-1 phytochelatin synthase status:Confirmed TR:O17885 protein_id:CAA91338.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Phytochelatin Phytochelatin synthase 368.4 5.1e-126 1
Defensin_beta Beta defensin 6.3 9.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Phytochelatin 1/1 47 181 .. 1 135 [] 368.4 5.1e-126
Defensin_beta 1/1 272 285 .. 20 33 .] 6.3 9.9
Alignments of top-scoring domains:
Phytochelatin: domain 1 of 1, from 47 to 181: score 368.4, E = 5.1e-126
*->qfqTQsEPAyCGLatLsvVLNALkvDPGRkWKGPWRWyDesMLDCCe
qf+TQ+EPAyCGL+tL++VLNAL+vDP+++WK+PWR+y+esMLDCC+
F54D5.1 47 QFRTQDEPAYCGLSTLVMVLNALEVDPEKVWKAPWRFYHESMLDCCV 93
PLekikkeGItlgkvsCLAhCnGlkveafradqsPDtiddFRksvvsCts
PLe+i+k+GI+l+++sCLA+Cn+lk++++++d+sPD++++FR+s+v++++
F54D5.1 94 PLENIRKSGINLQQFSCLAKCNRLKSTVSYGDNSPDFLKKFRTSLVNSVR 143
sedchLviSYhRkvlgQTGsGHFSPiGGYheekDmvLI<-*
s+d++Lv+SY+R+vlgQTGsGHFSP+++Yhe++D+vLI
F54D5.1 144 SDDQVLVASYDRSVLGQTGSGHFSPLAAYHEDSDQVLI 181
Defensin_beta: domain 1 of 1, from 272 to 285: score 6.3, E = 9.9
*->rqiGtClgprvkCC<-*
r+ G C++p+ CC
F54D5.1 272 RKFGQCFAPHAMCC 285