hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F54D5.8
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Query:  F54D5.8  CE03412  locus:dnj-13 DNAJ protein status:Partially_confirmed TR:Q20774 protein_id:CAA91334.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
DnaJ     DnaJ domain                                    141.1    1.9e-38   1
DnaJ_C   DnaJ C terminal region                          69.4    3.3e-18   1
DUF643   Protein of unknown function (DUF643)             3.2        9.1   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
DUF643     1/1      47    63 ..     1    19 [.     3.2      9.1
DnaJ       1/1       4    68 ..     1    79 []   141.1  1.9e-38
DnaJ_C     1/1     209   327 ..     1   119 [.    69.4  3.3e-18

Alignments of top-scoring domains:
DUF643: domain 1 of 1, from 47 to 63: score 3.2, E = 9.1
                   *->iNEISdFYDnLskdlKKeI<-*
                        EI + YD Ls d KK I
     F54D5.8    47    --EIAEAYDVLSDDKKKKI    63

DnaJ: domain 1 of 1, from 4 to 68: score 141.1, E = 1.9e-38
                   *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktlerae
                      dyY++LG++++A+d+eIKKAYRk+AlkyHPDKN++ +
     F54D5.8     4    DYYKVLGISKGATDDEIKKAYRKMALKYHPDKNKEAG---------- 40

                   skeeAeekFkeIneAYevLsDpekRaiYDqyg<-*
                       Ae kFkeI+eAY+vLsD++k++iYDq+g
     F54D5.8    41 ----AENKFKEIAEAYDVLSDDKKKKIYDQFG    68

DnaJ_C: domain 1 of 1, from 209 to 327: score 69.4, E = 3.3e-18
                   *->qrlRlaGeGeaGenGGppGDLYVvirVkeHkiFeRdGdDLycevpis
                      +++ +++eG++ +n   p D   vi+ k+H++F+R+G D+    +is
     F54D5.8   209    TKITFPKEGDQHPN-RTPADIVFVIKDKPHPKFKREGSDIKRVEKIS 254

                   ftqAaLGgeveVPTLdG.kvkLkIPaGTQsGtvfrLkGKGvpklnrgsgr
                   +  A  G ++++PTLdG + +L+     ++Gt+ rL GKG p++   s r
     F54D5.8   255 LKSALTGLDIMIPTLDGaDYRLQLNDVIKPGTTRRLTGKGLPNPKSPSHR 304

                   GDLyVhVkVetPkkLseeQkeLL<-*
                   GDL++++ Ve P  L++ Q+e++
     F54D5.8   305 GDLIIEFDVEFPSQLNPTQREVI    327

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