hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F54D5.7
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Query:  F54D5.7  CE03411   acyl-CoA dehydrogenase status:Confirmed SW:Q20772 protein_id:CAA91333.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Acyl-CoA_dh   Acyl-CoA dehydrogenase, C-terminal doma   175.8    6.8e-49   1
Acyl-CoA_dh_M Acyl-CoA dehydrogenase, middle domain      73.3    1.7e-19   1
Acyl-CoA_dh_N Acyl-CoA dehydrogenase, N-terminal doma    61.2    1.2e-15   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Acyl-CoA_dh_N   1/1      32   148 ..     1   132 []    61.2  1.2e-15
Acyl-CoA_dh_M   1/1     150   251 ..     1   106 []    73.3  1.7e-19
Acyl-CoA_dh     1/1     254   403 ..     1   162 []   175.8  6.8e-49

Alignments of top-scoring domains:
Acyl-CoA_dh_N: domain 1 of 1, from 32 to 148: score 61.2, E = 1.2e-15
                   *->LseEqemlratvREkFaqeeiaPyaAeGRRvDksgefPalrelikaL
                      L+e ++ l  ++R    qe ++P + e     ++++f+   +li ++
     F54D5.7    32    LTEDERSLMLSAR-EYCQERLLPRVTE---AYRTEKFD--PSLIPEM 72

                   gqlGllginvPEeyGGaGadylaRFmLHAQVaalviEElarvcAstgvil
                   g +Gllg +    yG aG +++         + l+  E+ rv+ +   ++
     F54D5.7    73 GSMGLLGAPYQ-GYGCAGTSTVG--------YGLIAREVERVDSGYRSTM 113

                   svhssLgqnpilkfGseEQKkkyLpqltsGdliga<-*
                   sv++sL+++pi + Gse QK+ky+p l+sG++ig+
     F54D5.7   114 SVQTSLVIGPIYNYGSEDQKQKYIPDLASGKKIGC    148

Acyl-CoA_dh_M: domain 1 of 1, from 150 to 251: score 73.3, E = 1.7e-19
                   *->AlTEPgAGSDvgSlkTtAekkEGdd.yiLNGsKmWITNGgqAdwyiV
                      +lTEP+ GS  g++ T+A+ +E  ++y LNGsK WI+N++ +d+ +V
     F54D5.7   150    GLTEPNHGSNPGGMETKATWDETTKtYKLNGSKTWISNSPVSDVMVV 196

                   lAvTDpakkvpgkkgitaFlVekdtpGfsiGkKedKLGlRgSdTcELiFE
                    A++++      ++ i +F+ e++++G+++ k e KL lR+S T ++  +
     F54D5.7   197 WARSARH-----NNKIKGFILERGMKGLTTPKIEGKLSLRASITGQIAMD 241

                   DvrvPesniL<-*
                   Dv vPe+n+L
     F54D5.7   242 DVPVPEENLL    251

Acyl-CoA_dh: domain 1 of 1, from 254 to 403: score 175.8, E = 6.8e-49
                   *->GkGfkiametLnlagRlgiAaqalGiArrAleeAveYAkeRkqFGak
                       +G++  +++Ln ++RlgiA++alG+A+ ++ +A++Y  +R+qFG +
     F54D5.7   254    AEGLQGPFGCLN-NARLGIAWGALGAAEECFHLARQYTLDRQQFG-R 298

                   pIadfQlvqfkLAdmateleaaRllvyrAAwl.DqGkdarleaamAKlfa
                   p+a++Ql+q k+Adm+te+  +   ++r+ +l+D+Gk  + +++++K  +
     F54D5.7   299 PLAQNQLMQLKMADMLTEISLGLQGCLRVSRLkDEGKVQSEQISIIKRNS 348

                   teaAvevadeAvQihGGyGytkegpnarerdavSypveRlyRDarilrIy
                   +  A+eva++A++++GG+G+++e           y + R++       +y
     F54D5.7   349 CGKALEVARKARDMLGGNGIVDE-----------YHIMRHMVNLETVNTY 387

                   EGTsEIqrliIaRall<-*
                   EGT ++++li++Ra++
     F54D5.7   388 EGTHDVHALILGRAIT    403

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