hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F54F11.2
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Query:  F54F11.2  CE11095   Zinc-binding metalloprotease status:Partially_confirmed TR:O45569 protein_id:CAB05739.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Peptidase_M13 Peptidase family M13                      614.8   2.8e-191   2
Peptidase_M4  Thermolysin metallopeptidase, catalytic    23.9    3.9e-05   2

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Peptidase_M4    1/2     657   669 ..   153   165 .]    11.2      0.1
Peptidase_M13   1/2     619   821 ..     1   210 [.   255.1  7.9e-79
Peptidase_M4    2/2    1407  1419 ..   153   165 .]    12.8    0.038
Peptidase_M13   2/2    1369  1582 ..     1   222 []   366.8 9.4e-114

Alignments of top-scoring domains:
Peptidase_M4: domain 1 of 2, from 657 to 669: score 11.2, E = 0.1
                   *->VVgHElTHGVTEq<-*
                      ++gHElTHG+ +q
    F54F11.2   657    IAGHELTHGFDDQ    669

Peptidase_M13: domain 1 of 2, from 619 to 821: score 255.1, E = 7.9e-79
                   *->NAyynpefNsitfpagilvpPffdltyPravnskyGgiGfVlgHEig
                      NA+y+pe Nsitfpagil +Pf+d+++P +vn  +G +G + gHE++
    F54F11.2   619    NAWYQPELNSITFPAGILKKPFYDFNWPASVN--FGAMGVIAGHELT 663

                   HgFDdqGiqldeeGsLadcwnlrdWkwtdednkcfqdrvkclidqyseav
                   HgFDdqG+q+ + G       l +W +++ ++  f ++++c++++ys ++
    F54F11.2   664 HGFDDQGVQWNGVG------TLSGW-MDATSKVSFTNMAQCVVNEYS-GF 705

                   kPddkgwfnncank.GattlgEniADlgGlraAlkaykkkssdeer.eeq
                   +P dk  +   a  +Ga+t+gEniAD gG++ A++ayk++    ++++
    F54F11.2   706 CPLDKATYGSAACIdGAQTQGENIADNGGIHSAFRAYKNYVDLYGPdPVL 755

                   rlpgLenftpdQLfFetyAyswCrk.srpenslrpllvdpHsPnelRvNg
                   ++p+L+ f+pdQLfF ++A++wC+ +++++  lr++lvd+HsP  +Rv g
    F54F11.2   756 PDPQLQYFNPDQLFFLSFAQVWCQMpYTDAQFLRQILVDVHSPSIYRVLG 805

                   avrnmPaFasaFnCkp<-*
                    ++n+PaF +aFnC++
    F54F11.2   806 TIQNFPAFKTAFNCPS    821

Peptidase_M4: domain 2 of 2, from 1407 to 1419: score 12.8, E = 0.038
                   *->VVgHElTHGVTEq<-*
                      V+gHElTHG+ +q
    F54F11.2  1407    VAGHELTHGFDDQ    1419

Peptidase_M13: domain 2 of 2, from 1369 to 1582: score 366.8, E = 9.4e-114
                   *->NAyynpefNsitfpagilvpPffdltyPravnskyGgiGfVlgHEig
                      NA+y+pe NsitfpagilvpP+f++++P+++n  yGg+G V gHE++
    F54F11.2  1369    NAWYQPELNSITFPAGILVPPYFNPNWPPSIN--YGGMGLVAGHELT 1413

                   HgFDdqGiqldeeGsLadcwnlrdWkwtdednkcfqdrvkclidqyseav
                   HgFDdqG+q+++ G      nl++W ++d+++++f+++++c+i++ys ++
    F54F11.2  1414 HGFDDQGVQWGPTG------NLARW-MDDNSMAGFKNMSQCVINEYS-GF 1455

                   kPddkgwfnncankGattlgEniADlgGlraAlkaykkkssdeer.eeqr
                   +P ++++++++++kG++t+gEniAD gG++aA++ayk+++s ++++++ +
    F54F11.2  1456 CPLNATNYSPNCVKGPQTQGENIADNGGVHAAFNAYKTHQSLDGPdPRLP 1505

                   lpgLenftpdQLfFetyAyswCrk.srpenslrpllvdpHsPnelRvNga
                   ++ + +ft+dQLfF+++A++wC++++++++++++++vdpHsP ++Rv+g
    F54F11.2  1506 DRLFGQFTHDQLFFMSFAQVWCEVrRTDDALYTQIMVDPHSPSMYRVYGT 1555

                   vrnmPaFasaFnCkpGdkMfpepekrc<-*
                   ++n+PaF++aFnC++G+k  pe+++++
    F54F11.2  1556 IQNFPAFQTAFNCPLGSKSAPEQHCEV    1582

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