Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F54F3.3
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Query: F54F3.3 CE18732 lipase status:Partially_confirmed TR:Q93789 protein_id:CAB01973.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
abhydro_lipase ab-hydrolase associated lipase region 161.2 1.1e-44 1
abhydrolase alpha/beta hydrolase fold 30.3 2.7e-08 1
ATP-synt_8 ATP synthase protein 8 4.6 2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
abhydro_lipase 1/1 23 94 .. 1 71 [] 161.2 1.1e-44
ATP-synt_8 1/1 125 140 .. 41 56 .] 4.6 2
abhydrolase 1/1 108 176 .. 1 57 [. 30.3 2.7e-08
Alignments of top-scoring domains:
abhydro_lipase: domain 1 of 1, from 23 to 94: score 161.2, E = 1.1e-44
*->idpeanmnvsqlIkkwGYpsEeHtVtTeDGYILtLhRIprgkknktd
dpe m+++q+I++wGYp++++ VtTeDGYIL+LhRIp+gk+n+t+
F54F3.3 23 ADPEMKMTTPQIIMRWGYPAMIYDVTTEDGYILELHRIPYGKTNVTW 69
.lgkrPvVlLQHGLlasSsnWVvNl<-*
++gk+PvV++QHGL +sSsnWVvNl
F54F3.3 70 pNGKKPVVFMQHGLECSSSNWVVNL 94
ATP-synt_8: domain 1 of 1, from 125 to 140: score 4.6, E = 2
*->ktklkkkpnpWnWkWT<-*
k+ +++++ +W+W W
F54F3.3 125 KNLKPSHSAFWDWSWD 140
abhydrolase: domain 1 of 1, from 108 to 176: score 30.3, E = 2.7e-08
*->frvillDlrGfGeSsp.............sdlaeyrfddlaedleal
++v+l++ rG +S ++++ +++++ + ++e dl +++e+
F54F3.3 108 YDVWLGNFRGNTYSMKhknlkpshsafwdWSWDEMQQYDLPAMIEKA 154
ldalglekpvilvGhSmGGaial<-*
l+ +g++ ++++GhS+G+++++
F54F3.3 155 LEVTGQDS-LYYIGHSQGTLTMF 176