Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F54G2.1
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Query: F54G2.1 CE19460 status:Partially_confirmed TR:O76570 protein_id:AAC64625.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
C2 C2 domain 150.7 4.8e-42 3
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
C2 1/3 116 149 .. 1 35 [. 22.6 4.7e-05
C2 2/3 212 247 .. 40 76 .. 27.9 1.3e-06
C2 3/3 1051 1141 .. 1 88 [] 99.9 2.3e-27
Alignments of top-scoring domains:
C2: domain 1 of 3, from 116 to 149: score 22.6, E = 4.7e-05
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkd<-*
L++ ++eAk+L +kD +ng+sDP++ + + + +++
F54G2.1 116 LNILLLEAKDLIAKD-VNGFSDPFAMMGVVPGTRK 149
C2: domain 2 of 3, from 212 to 247: score 27.9, E = 1.3e-06
*->TkvikktlNPvWNEtFtFevpppdlqe.tLeitVyDyd<-*
++v kktlNP+W E+F+F ++d+q++ +i ++D+d
F54G2.1 212 SSVQKKTLNPKWSEKFQFT--VEDVQRdQFHIDIWDHD 247
C2: domain 3 of 3, from 1051 to 1141: score 99.9, E = 2.3e-27
*->LrVtvieAknLppkDkkngksDPYVkvslggdpkdqk.......kkT
L++ +i Ak+ + D +ng+sDP+V++++ + + + + + kT
F54G2.1 1051 LVLDIIGAKQIIALD-SNGLSDPFVVIEIIP----KFrypavpvVKT 1092
kvikktlNPvWNEtFtFevpppdlqe.tLeitVyDydrfgrddflGevs<
kv+ k+lNP+++EtF+F++pp++ +L++tV+D+d ++++df Ge+
F54G2.1 1093 KVVSKSLNPIFDETFEFHIPPNPPSTaMLHFTVMDHDYLRSNDFAGEAF 1141
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F54G2.1 - -