hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F55A12.4
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Query:  F55A12.4  CE26924  locus:dhs-2 dehydrogenase status:Partially_confirmed TR:O01758 protein_id:AAB54122.2

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N
--------  -----------                                   -----    ------- ---
adh_short short chain dehydrogenase                     140.8    8.6e-39   1
OATP_C    Organic Anion Transporter Polypeptide (OATP     2.8        8.7   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
OATP_C      1/1      23    50 ..   383   410 .]     2.8      8.7
adh_short   1/1      68   284 ..     1   236 [.   140.8  8.6e-39

Alignments of top-scoring domains:
OATP_C: domain 1 of 1, from 23 to 50: score 2.8, E = 8.7
                   *->klsargvaawnivvslvslagyiclffi<-*
                      +l   g+++w++ +++v+ ++y+ ++f+
    F55A12.4    23    SLEMLGILYWILNLTVVESVFYLVVAFL    50

adh_short: domain 1 of 1, from 68 to 284: score 140.8, E = 8.6e-39
                   *->tgKvaLvTGassGIGlaiAkrLakeGakVvvvdrreekae.qvaael
                      + +++ +TG++sG+G+ +A+ ++++G+ V++++++e + e++ a++
    F55A12.4    68    SKRAVFITGCDSGFGRGLALKCLEQGMPVFAGCLTEQGIEsLSAEAR 114

                   kaelG.dralfiqlDvtdeeqvkaavaqaver...lGdrlDvLVNNAGil
                   k+++ ++++ ++ +Dvt++e+v  ++++  ++ +++G +l+++VNNAGi+
    F55A12.4   115 KSIGNgRSLDAFLMDVTSDESVGEVAKRLEKKceqYG-GLHAVVNNAGIT 163

                   gdgppfeelseedwervidvNltGvflltravlpamdhmlkrkgGrIvNi
                   g+  + + l+  ++ +v ++Nl+G++++t av +    +lk+ +Gr+v++
    F55A12.4   164 GKHIADDFLDINEYLKVANINLWGPIRTTMAVKK----LLKKARGRVVTV 209

                   sSvaGlrvgvpglsaYsASKaavigltrsLAlElaphgtgIrVnavaPGg
                   +S+ ++ vg pgl +Ys SK +v + +++ ++El+p g  I V + +PG+
    F55A12.4   210 ASICAR-VGLPGLGPYSVSKYGVSAYCDVIRQELRPFG--ISVHVLEPGF 256

                   vdTdmtkalrsrlieakkkvrevadiadpeleerits.titplgr<-*
                   ++T++  +                  +d e++e++    +  +++
    F55A12.4   257 FNTPLINREK----------------IDAEILEAWKHaPN-EVKQ    284

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