Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F55A3.1
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Query: F55A3.1 CE17111 status:Partially_confirmed TR:Q9N5R7 protein_id:AAF39833.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 52.4 8.1e-18 1
HSP33 Hsp33 protein 2.4 8.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
zf-C3HC4 1/1 53 96 .. 1 50 [] 52.4 8.1e-18
HSP33 1/1 92 104 .. 290 302 .] 2.4 8.6
Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 53 to 96: score 52.4, E = 8.1e-18
*->CrICleelkepsndfplilpCgHsGslkyfCrsClerWls...gntt
Cr+C++++ pC+++Gs+ky++++Cl++Wl+ +++++
F55A3.1 53 CRVCRGNEGSLY------YPCLCTGSIKYVHQECLVEWLKyskKEV- 92
vkCplC<-*
C+lC
F55A3.1 93 --CELC 96
HSP33: domain 1 of 1, from 92 to 104: score 2.4, E = 8.6
*->vCdFCgekYlFde<-*
vC+ C+ kY F +
F55A3.1 92 VCELCNHKYSFQP 104