Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F55B11.1
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Query: F55B11.1 CE16116 xanthine dehydrogenase status:Partially_confirmed TR:O17892 protein_id:CAB05902.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ald_Xan_dh_C2 Aldehyde oxidase and xanthine dehydroge 979.6 7.6e-291 1
FAD_binding_5 FAD binding domain in molybdopterin deh 325.5 6.1e-94 1
CO_deh_flav_C CO dehydrogenase flavoprotein C-termina 215.6 7.5e-61 1
fer2_2 [2Fe-2S] binding domain 178.1 1.7e-64 1
Ald_Xan_dh_C Aldehyde oxidase and xanthine dehydroge 176.4 3.3e-49 1
fer2 2Fe-2S iron-sulfur cluster binding doma 41.3 4.4e-10 1
Adeno_E3_CR1 Adenovirus E3 region protein CR1 3.4 7.5 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
fer2 1/1 18 87 .. 1 95 [] 41.3 4.4e-10
fer2_2 1/1 95 171 .. 1 86 [] 178.1 1.7e-64
Adeno_E3_CR1 1/1 322 340 .. 60 78 .] 3.4 7.5
FAD_binding_5 1/1 259 440 .. 1 190 [] 325.5 6.1e-94
CO_deh_flav_C 1/1 446 556 .. 1 113 [] 215.6 7.5e-61
Ald_Xan_dh_C 1/1 610 716 .. 1 120 [] 176.4 3.3e-49
Ald_Xan_dh_C2 1/1 718 1264 .. 1 609 [] 979.6 7.6e-291
Alignments of top-scoring domains:
fer2: domain 1 of 1, from 18 to 87: score 41.3, E = 4.4e-10
*->vtidGkgvtvevpdgettlLdaaene.aggidiPysCrgelpGgaCG
++++Gk+v+ +d+ +tl +++ +++ +++++ +C + Gg CG
F55B11.1 18 FYVNGKRVEEKDVDPKMTLATYLR-DkLKLTGTKIGCNE---GG-CG 59
tCkvkvveGevdlgqsdleeqsflegeelakgyviegeSrLaCqtypks<
+C++++ + + e +k++ +++C +++++
F55B11.1 60 ACTIMIS-------HIE--------NGE-IKHFS-----ANSCLMPVCG 87
-*
F55B11.1 - -
fer2_2: domain 1 of 1, from 95 to 171: score 178.1, E = 1.7e-64
*->TvEGLgstkg.rLHpvQeafakhhGlQCGFCTPGmiMsayaLLrnnp
TvEG+gs ++rLHpvQe++ak hG+QCGFCTPG++M++yaLLrnnp
F55B11.1 95 TVEGIGSVAKnRLHPVQERLAKAHGSQCGFCTPGFVMAMYALLRNNP 141
skssqpPPfpkltdeeirealaGNLCRCTGYrpIveAikd<-*
+ P t+++i+ +l+GNLCRCTGYrpI+eA+++
F55B11.1 142 N------P----TISDINLGLQGNLCRCTGYRPILEAFYS 171
Adeno_E3_CR1: domain 1 of 1, from 322 to 340: score 3.4, E = 7.5
*->eGtYyGyNrkgsqkknYiV<-*
+G Y+G+ + + nY V
F55B11.1 322 DGVYMGTGMSLTDMDNYSV 340
FAD_binding_5: domain 1 of 1, from 259 to 440: score 325.5, E = 6.1e-94
*->ervtWyrPvsleeLlelKaasgkdhPdAKLVvGNTevGievkfklrl
++++Wy+Pvs+++Ll+lK++ P+A+L+ GN+e+ ie+kf++++
F55B11.1 259 HHTKWYQPVSYDDLLSLKRE----LPHARLISGNSELAIELKFRFID 301
YpkiidptnipELneirededgleiGAavtLsklievlreaieklPeekT
+p++i+p++++ L+e ++++dg+++G++++L++++++ ++ +++lP+e+T
F55B11.1 302 LPAVINPRQVKVLHEKHLENDGVYMGTGMSLTDMDNYSVQLMKDLPREQT 351
qvfkalaehLrwfAGkQiRNvAsiGGNIatAspiqFPSDlnPvLmAagAk
+v+k+++e+L+wfAG ++RNvAs++GNIatAspi SDlnP++mA++A
F55B11.1 352 AVLKHVHEMLHWFAGIHVRNVASVAGNIATASPI---SDLNPIWMASNAL 398
LnlisssggIerrvlmdeeFftgyrktvLepdEiLlsveIPks<-*
++l+s+ +g e+rv++de+Ff+gyrktv+++dEi+ +v++P
F55B11.1 399 VVLDSEARG-EKRVHIDEKFFLGYRKTVIQQDEIIKAVIVPLL 440
CO_deh_flav_C: domain 1 of 1, from 446 to 556: score 215.6, E = 7.5e-61
*->feafKqAkRrdGdDIAiVnaAfnvrfkpgggvVeeirLAFGGmApkt
f+a+KqA+Rr+ dDIAiV++Af+v+++p+++vVe+ir+++GGmAp t
F55B11.1 446 FAAYKQAQRRE-DDIAIVTGAFLVKLDPKTLVVEKIRISYGGMAP-T 490
tilAkkteqfLiGkklneetLeeaieLLadelvpsssapGGmveYRrsLa
t+lA++t+++LiG+k+++++L++a++LL del++++++pGGm++YR+sLa
F55B11.1 491 TKLALTTMEKLIGEKWSQTFLDKALGLLSDELKLPAGVPGGMSQYRLSLA 540
vsfffkfylevsqkle<-*
+sfffkf+l vs+kle
F55B11.1 541 LSFFFKFFLGVSKKLE 556
Ald_Xan_dh_C: domain 1 of 1, from 610 to 716: score 176.4, E = 3.3e-49
*->TGeAvYvdDipapgmlLylafVrSpkAHArIvsIDtsaAlalPGVva
TGeAvY+dDi+++++ ++afV+Sp+AH+ + sID++aAl+++GVv+
F55B11.1 610 TGEAVYCDDINVADCN-HIAFVLSPIAHGTLNSIDYTAALEIDGVVG 655
ViTakDlpglnrgigptapnendepdtvdavlAddkVryvGqpVAaVvAd
i+a+D++++ +++ + d+p v+ +++++++Gqp+Aa+vA+
F55B11.1 656 TIDASDVTTGAQMG-----HHSDTP-----VFVKETITFHGQPIAAIVAT 695
deetArdAAeLVkVeYeeLpppa<-*
d+e+Ar+AA+LVk++Y++++ +
F55B11.1 696 DHEIARKAASLVKLDYSVEK--P 716
Ald_Xan_dh_C2: domain 1 of 1, from 718 to 1264: score 979.6, E = 7.6e-291
*->vtiekAiepdApvvhdslfenvpGhgreilhertierGDkaveeafa
vti++A+e ++s++ + h++++++ + +e
F55B11.1 718 VTIKQALE------AESFVFK---------HFVIHSSLN--DNEQVI 747
sAdhkilsaivvvegeyhlgrqehfymETqaalAvpdpedgeLtiysSTQ
++d++++++ +veg++ +g+qehfy+ETq+++ +p+ ed+eL+i++S+Q
F55B11.1 748 KSDWSKYDR--IVEGSIDMGGQEHFYLETQQCIVIPH-EDDELEIIISNQ 794
aPhyvrtmvAkvLgipehkVrVivprvGGGFGGkkvfslslaliaALAAl
+++ v+ +vAk+Lg+++hk+ +v+r+GGGFGGk++ + la++a LAA+
F55B11.1 795 CVNDVQIEVAKCLGMAQHKISTKVKRIGGGFGGKESTGAILAVPASLAAK 844
klgRPVkwvldRdEdmiatggRHpfkikykvGakkDGkitAldvdvladg
k+gRP+k+ ++R++dm +tg+RHpf+ +yk++++++Gk++ ld +l++
F55B11.1 845 KFGRPMKFKFERFDDMAITGTRHPFTLQYKLAVDENGKFLDLDYTALSNS 894
GayadlsdpvveraglhagvclgvYkipniriegkavkTNlpsngvAfRC
G++ dls++v++ra++ha ++vYk++n++i+gk++kTNl+sn+ AfR
F55B11.1 895 GHTIDLSMGVMQRAMVHA---DNVYKFENADITGKMCKTNLASNT-AFR- 939
GfGgpqgmfAaErlidelArkLGiDplEiRrrNlytPEkegdttpfgqel
GfGgpqgmf++E+++ ++A+k G ++E+R++N+y kegd+tpfg++l
F55B11.1 940 GFGGPQGMFGTEIMVKHVAEKFGFNHDEVRVKNFY---KEGDCTPFGMHL 986
dsgnlpellecldecrkssefrkRrakearaaveksLfNrgnswrkrGig
+ +n+++ +decrk+s++ R ++v+k fN +n++rkrGi
F55B11.1 987 NQCNVTR---TWDECRKNSDYDNRL-----EEVKK--FNDSNKFRKRGIY 1026
lvptkygigfgapplnqagAlvrlytDGsVtvstGgteiGQGlhTkmaQi
l pt++gigfg+++lnqagAlv++ytDGsV+vs+Gg+e+GQGlhTk+ Qi
F55B11.1 1027 LTPTRFGIGFGLKQLNQAGALVLVYTDGSVLVSHGGMEMGQGLHTKILQI 1076
aAeeLGmsGipledIrviegDTdkvpngsgTaaSrgtdmnGnAVrdAcek
aA++L +ip+e+I++++++Tdkvpn+s+TaaS+g+dmnG AV+dAc++
F55B11.1 1077 AARCL---EIPIERIHIHDTSTDKVPNASATAASVGSDMNGLAVQDACRQ 1123
LrerLkpiaakmlesseeditwedgkvvvkgkivaaayvdsvslsAtgfy
++erL+++++ ++ ++tw+d+ v+aayvd+vslsA+gf+
F55B11.1 1124 INERLERFKKLDP-----NGTWDDW--------VKAAYVDRVSLSASGFG 1160
atpgvtpptgfdpgteatgsygtpflyftYGaaavEVeVDclTGdvkvlr
+ ++++d+ g+ + f y YG a++EVe+DclTGd+++lr
F55B11.1 1161 IIH----HEPVDFFN---GKGAELFGYSVYGTACCEVEIDCLTGDHHLLR 1203
tdivmDcGtslNPaideGQIeGgfvQGiGlalmEEivyddpgGnlltrsl
tdivmD+G+slNPaid+GQIeG+f+QG+Gl++mEEi+++ p+G ltr++
F55B11.1 1204 TDIVMDVGESLNPAIDIGQIEGAFIQGYGLFTMEEIKIR-PDGIRLTRGP 1252
gdYkIPtidDiP<-*
g+YkIP +dD P
F55B11.1 1253 GNYKIPSADDAP 1264