Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F55B12.3a
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: F55B12.3a CE25007 locus:sel-10 Candida CDC4 protein like status:Confirmed TN:CAB02129 protein_id:CAB02129.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
WD40 WD domain, G-beta repeat 235.2 9.4e-67 7
F-box F-box domain 31.2 1.4e-06 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
F-box 1/1 122 169 .. 1 46 [] 31.2 1.4e-06
WD40 1/7 245 282 .. 1 39 [] 24.2 4.4e-05
WD40 2/7 286 324 .. 1 39 [] 44.0 1e-10
WD40 3/7 328 364 .. 1 39 [] 47.8 8.3e-12
WD40 4/7 368 404 .. 1 39 [] 39.0 2.8e-09
WD40 5/7 408 446 .. 1 39 [] 38.6 3.6e-09
WD40 6/7 453 489 .. 1 39 [] 22.4 0.00015
WD40 7/7 493 530 .. 1 39 [] 45.0 5.5e-11
Alignments of top-scoring domains:
F-box: domain 1 of 1, from 122 to 169: score 31.2, E = 1.4e-06
*->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwf.kl
+ l++LP el ++Il +L dll++++VSk+w+ ++ +++w++
F55B12.3a 122 DFLSCLPVELGMKILHNLTGYDLLKVAQVSKNWKLISEIDkIWKsLG 168
l<-*
F55B12.3a 169 V 169
WD40: domain 1 of 7, from 245 to 282: score 24.2, E = 4.4e-05
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
a+l+gH++ v + +d +l++gS+D+t+k+W
F55B12.3a 245 IMGSAVLrGHEDHVITCMQIHD--DVLVTGSDDNTLKVWC 282
WD40: domain 2 of 7, from 286 to 324: score 44.0, E = 1e-10
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
ge+ +tl gHt++v+ +s+ g+y++sgS D+t+k+W+
F55B12.3a 286 GEVMYTLvGHTGGVWTSQISQC-GRYIVSGSTDRTVKVWS 324
WD40: domain 3 of 7, from 328 to 364: score 47.8, E = 8.3e-12
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g++l+tl+gHts+v+c+a + + +l++gSrD t+++Wd
F55B12.3a 328 GSLLHTLqGHTSTVRCMAMAGS---ILVTGSRDTTLRVWD 364
WD40: domain 4 of 7, from 368 to 404: score 39.0, E = 2.8e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g latl+gH ++v+cv f+ +++sg+ D t+k+W+
F55B12.3a 368 GRHLATLhGHHAAVRCVQFDGT---TVVSGGYDFTVKIWN 404
WD40: domain 5 of 7, from 408 to 446: score 38.6, E = 3.6e-09
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g c++tl+gH++ v+++ f + +++++sgS D +i++Wd
F55B12.3a 408 GRCIRTLtGHNNRVYSLLFESE-RSIVCSGSLDTSIRVWD 446
WD40: domain 6 of 7, from 453 to 489: score 22.4, E = 0.00015
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
ec+a l+gHts + + + +l+s+ +D +++Wd
F55B12.3a 453 QECVALLqGHTSLTSGMQLRGN---ILVSCNADSHVRVWD 489
WD40: domain 7 of 7, from 493 to 530: score 45.0, E = 5.5e-11
*->geclatl.gHtspvtcvafspdsgpylasgSrDgtiklWd<-*
g+c++ l+gH s++t++ + +++a++S+Dgt+klWd
F55B12.3a 493 GTCVHMLsGHRSAITSLQWFGR--NMVATSSDDGTVKLWD 530