Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F55D12.5
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Query: F55D12.5 CE28566 Activin types I and II receptor domain status:Partially_confirmed TR:Q19659 protein_id:CAA99842.2
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Activin_recp Activin types I and II receptor domain 85.7 2.3e-25 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Activin_recp 1/1 17 112 .. 1 119 [] 85.7 2.3e-25
Alignments of top-scoring domains:
Activin_recp: domain 1 of 1, from 17 to 112: score 85.7, E = 2.3e-25
*->lledliklpagvvlavedTapllkCyCsgccedngcnghtCetdg..
+++++k ++ ++C+Cs+ + +c+g++Ce +++
F55D12.5 17 IYSASRKTSTS-----------IRCQCSTDAGGIQCHGSWCEARNna 52
dklaaCfvsveendggeiqyeeivskgCislnelvprgrpfeCktspkpr
++laaC v+ +++++++ + +C+++ne+ + + +C++++k++
F55D12.5 53 THLAACAVVKVHSSSRQ-------VLACVRVNEPAE---DGYCEYDAKRN 92
qrvtiyieCCdtgDfCNrnltptl<-*
vt+ ++C+++D+CN++l++++
F55D12.5 93 --VTK--CWCTGSDYCNVDLVDSI 112