Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F55G11.2
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Query:  F55G11.2  CE18748    status:Predicted TR:Q9XUD8 protein_id:CAB05218.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
DUF141        Domain of unknown function DUF141         184.6    1.6e-51   1
Stanniocalcin Stanniocalcin family                        8.8        0.2   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Stanniocalcin   1/1       1    19 [.     1    19 [.     8.8      0.2
DUF141          1/1      17   135 ..     1   138 []   184.6  1.6e-51

Alignments of top-scoring domains:
Stanniocalcin: domain 1 of 1, from 1 to 19: score 8.8, E = 0.2
                   *->mLqfsgLiLvflvldtAag<-*
                      mLq+  ++L+f+v + Aag
    F55G11.2     1    MLQNILVCLAFAVVVSAAG    19

DUF141: domain 1 of 1, from 17 to 135: score 184.6, E = 1.6e-51
                   *->aagftCipggpitinkpvnisnpgfyPagwnessskippqfpanqnC
                      aag++C ++g   inkpv++++p+++Pa+w+e+++  +pq+ ++q+C
    F55G11.2    17    AAGNVC-KTG-KAINKPVIDGTPVYWPASWTETQP--APQLEKGQSC 59

                   swtinvPkGyyAkltlsakttisagddkddsitvtdsngnlekvtsntgs
                   sw++++P GyyAkl++s+ktt     dkd++++++d +gnl ++t+   +
    F55G11.2    60 SWIVTIPHGYYAKLIISGKTT-----DKDSRFQTVDAAGNLIQTTQ---E 101

                   dlespyyFvspkftinlstgnSVsndgnvtFgFsvqwsplp<-*
                   ++e pyyF++ kfti++      +n g++tF+F+v+w+plp
    F55G11.2   102 NME-PYYFPASKFTIAV------TNEGSATFAFKVVWWPLP    135



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