hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F55H12.2
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Query:  F55H12.2  CE11208   protein-tyrosine phosphatase status:Partially_confirmed TR:Q9XVM4 protein_id:CAB03141.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
Y_phosphatase Protein-tyrosine phosphatase              111.5    1.2e-30   2
MCR_beta      Methyl-coenzyme M reductase beta subuni     1.5        9.2   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
MCR_beta        1/1      10    30 ..   235   255 .]     1.5      9.2
Y_phosphatase   1/2     127   194 ..     1    76 [.    57.7  2.3e-15
Y_phosphatase   2/2     242   329 ..   170   274 .]    53.9  2.7e-14

Alignments of top-scoring domains:
MCR_beta: domain 1 of 1, from 10 to 30: score 1.5, E = 9.2
                   *->idefREPlkyvaegaaevkdk<-*
                      ++ef EP+  + ++ ae+++k
    F55H12.2    10    LEEFDEPFEEILKAEAEEAEK    30

Y_phosphatase: domain 1 of 2, from 127 to 194: score 57.7, E = 2.3e-15
                   *->NkeKNRykdilpyDhtRVkLkegsDYINAnyidgpqsrtlvvykkpk
                       k+KN + ++  yD tRV++ +g DY++A+++dg          kp+
    F55H12.2   127    PKDKNFSENVWLYDATRVIV-PGVDYYHASWVDG---------LKPN 163

                   ayIaTQgPlpnTieD.FWrMvweqkv.tvIV<-*
                   +yI++Q+P + + + +F +++ + k++  IV
    F55H12.2   164 QYILAQAPRDASAAKdFFKLLEHVKAeGLIV    194

Y_phosphatase: domain 2 of 2, from 242 to 329: score 53.9, E = 2.7e-14
                   *->PesgpkslldflrkvrksqsqenesgeaspdsgprSsctgPivVHCS
                      P s +  + d+l+k rk+ +        +p  g       P v++C+
    F55H12.2   242    PLS-AIEINDMLEKSRKYLG--------CPLKG-------PLVIVCK 272

                   AGiGRTGtfiaidillqqleaegvvidifdivkelRsqRpgmVQteeQYi
                   +G+  +G ++ id+ +++l+++g+     d++k++R +R++ ++t++ Y
    F55H12.2   273 DGAAKSGLVAFIDTEADRLMKHGKA-KHTDTIKQIRFMRSNTFDTFDSYD 321

                   Fiydaile<-*
                     ++ ++e
    F55H12.2   322 LGINSLIE    329

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