hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F55H2.2
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Query:  F55H2.2  CE00209   Membrane-associated atpase gamma chain status:Confirmed SW:P34462 protein_id:CAA81600.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
ATP-synt_D ATP synthase subunit D                       352.0   5.4e-108   1
DHHA2      DHHA2 domain                                   7.9       0.52   1
KH         KH domain                                      5.0        8.1   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
DHHA2        1/1      31    52 ..     1    23 [.     7.9     0.52
KH           1/1     127   160 ..    14    49 .]     5.0      8.1
ATP-synt_D   1/1      16   213 ..     1   202 []   352.0 5.4e-108

Alignments of top-scoring domains:
DHHA2: domain 1 of 1, from 31 to 52: score 7.9, E = 0.52
                   *->fdeLlkaKsdvsgDlsveelLrr<-*
                      + +Llk+K+d  + l + ++Lr+
     F55H2.2    31    GHSLLKKKADALN-LRFRDILRK    52

KH: domain 1 of 1, from 127 to 160: score 5.0, E = 8.1
                   *->GkgGsnIkeireetgakIdipddsegsverivtitg<-*
                      GkgG+nI ++++ +++ I++  +    +  ++ it
     F55H2.2   127    GKGGANIARLKKNYNKAIELLVE--LATLQTCFITL    160

ATP-synt_D: domain 1 of 1, from 16 to 213: score 352.0, E = 5.4e-108
                   *->MeLlllKnrlKlAkkGhkLLKrKrdaLileFrqlleEieelrrelge
                      M+++l+K+rlK+A+kGh+LLK+K daL l+Fr++l++i+e + ++ge
     F55H2.2    16    MAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGE 62

                   kmkeAyaslaeaqaavGlfavkeialsvkqCFpvleVekkveNImGVrvP
                   +mkeA++slaea++++G +++++++++v q  ++++V++k+eN+ GV++P
     F55H2.2    63 VMKEAAFSLAEAKFTAG-DFSHTVIQNVSQ--AQYRVRMKKENVVGVFLP 109

                   lfkaveverkpdergYgllgtsawvDeaaekfeealellveLAelettlk
                   +f+a++ ++ + + ++gl++++a+++++++++++a+ellveLA l+t+++
     F55H2.2   110 VFDAYQ-DGPDAYDLTGLGKGGANIARLKKNYNKAIELLVELATLQTCFI 158

                   lLaeEIrkTkRRVNAlEkviIPrlentikYIemeLeEmeREeffRLKkiK
                   +L+e+I++T+RRVNA+E+viIPr+ent+ YI +eL+EmeREeffR+Kki+
     F55H2.2   159 TLDEAIKVTNRRVNAIEHVIIPRIENTLTYIVTELDEMEREEFFRMKKIQ 208

                   kkkea<-*
                   ++k++
     F55H2.2   209 ANKKK    213

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