Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F56B3.10
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Query: F56B3.10 CE27168 status:Partially_confirmed TR:O45115 protein_id:AAK29835.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
GST_N Glutathione S-transferase, N-terminal domain 57.3 3.3e-15 1
GST_C Glutathione S-transferase, C-terminal domain 36.6 4.7e-09 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
GST_N 1/1 8 81 .. 1 88 [] 57.3 3.3e-15
GST_C 1/1 91 199 .. 1 121 [] 36.6 4.7e-09
Alignments of top-scoring domains:
GST_N: domain 1 of 1, from 8 to 81: score 57.3, E = 3.3e-15
*->sstlklfngrgspraervrillalekGveyeivrvdleagehksnkr
+++l++ n+rg rae++r++ +Gv++e+ r d +++ +
F56B3.10 8 RYKLYYVNMRG--RAEPIRLVFH-FLGVDFEDYRMDKGDF------T 45
peflklnPlmLpfgqvPaLvdgdGdgkkltESrAIarYlar<-*
++ + P+ +q+P +++ G +++l++++ I+rYla+
F56B3.10 46 GAMKDKAPM----KQLPFIEIDGG-KTTLCQTVSICRYLAK 81
GST_C: domain 1 of 1, from 91 to 199: score 36.6, E = 4.7e-09
*->Gkdpderaaaerarwdmiedsrfadlrldlawlpygkpergaekdee
G++ + a +dm +d +fadl+ +a+ y ++ kd
F56B3.10 91 GATK-----TDSAKVDMMAD-GFADLFQLAAMAKYAPDP---IKDS- 127
eveealekllkvlealeeeLkghgkkylvGdkltlADialapaldwlerl
+ +e + + le + Lk+++++y+vG ++ ++D++ + +l+ l +
F56B3.10 128 MMGTYKESIGPKLENMQDLLKKSKGEYFVGKSIHWCDVYILGVLQALDES 177
dpdplfreeyPnLkawrkrvaarp<-*
d ++ + P+L ++ r+ ++p
F56B3.10 178 DDGVF--DNLPELREYYLRMRNLP 199