Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F56C11.1
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Query: F56C11.1 CE28463 status:Confirmed TR:O61213 protein_id:AAK73882.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
An_peroxidase Animal haem peroxidase 433.1 2.4e-126 1
Ferric_reduct Ferric reductase like transmembrane com 223.5 3e-63 1
efhand EF hand 14.8 0.033 3
MgpC MgpC protein precursor 5.3 1.9 1
IBV_3A IBV 3A protein 5.1 2.5 1
DbpA DbpA RNA binding domain 4.7 5.8 1
FlaF_arch Archaeal flagellar protein F 3.9 4.3 1
Pox_T4_N Poxvirus T4 protein, N terminus 3.6 9.9 1
Focal_AT Focal adhesion targeting region 3.2 4.4 1
DUF272 Protein of unknown function, DUF272 2.9 7.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
FlaF_arch 1/1 91 119 .. 144 171 .] 3.9 4.3
DbpA 1/1 438 463 .. 64 89 .] 4.7 5.8
An_peroxidase 1/1 27 544 .. 1 596 [] 433.1 2.4e-126
Pox_T4_N 1/1 630 636 .. 42 48 .] 3.6 9.9
efhand 1/3 803 816 .. 16 29 .] 1.5 1.6e+02
efhand 2/3 821 849 .. 1 29 [] 4.5 23
Focal_AT 1/1 868 882 .. 71 85 .. 3.2 4.4
efhand 3/3 857 885 .. 1 29 [] 10.3 0.6
IBV_3A 1/1 1032 1061 .. 1 31 [. 5.1 2.5
MgpC 1/1 1115 1126 .. 1 12 [. 5.3 1.9
DUF272 1/1 1362 1372 .. 1 15 [. 2.9 7.9
Ferric_reduct 1/1 1038 1496 .. 67 684 .] 223.5 3e-63
Alignments of top-scoring domains:
FlaF_arch: domain 1 of 1, from 91 to 119: score 3.9, E = 4.3
*->GCitiiaYhYnGtaY.vVmpdGvevfeeV<-*
GC t++a+ aY++ ++Gv +++e
F56C11.1 91 GCTTLLAFFSQVVAYeIMQSNGVSCPLET 119
DbpA: domain 1 of 1, from 438 to 463: score 4.7, E = 5.8
*->gmadavLkklkgtrikGkqlrvrllk<-*
g+a++++++++++++k + +v++lk
F56C11.1 438 GLAPKTWETMNEDFYKKHTAKVEKLK 463
An_peroxidase: domain 1 of 1, from 27 to 544: score 433.1, E = 2.4e-126
*->rYRtlDGtCNNlenPtwGaanspfrRllpPsYdDGidaPRsrsvdgs
+ +++DG++NNl+n++wG+a s++ R Y+DG++ + +
F56C11.1 27 EFQRYDGWYNNLANSEWGSAGSRLHRDARSYYSDGVYSV------NN 67
pLPsaRvvSrkllsdrdfpipdpkfgtTlmvmqfGQFmaHDitktsssts
+LPsaR++S l+ ++ + p g T ++++f Q +a +i ++ + +
F56C11.1 68 SLPSARELSDILFKGESGI-PNTR-GCTTLLAFFSQVVAYEIMQSNGVSC 115
PiEengealeCckcdspvspqlshpeCfPIpvppdDPffgqlgvrClpFv
P E + +++ c + +++eC + g++ +pF+
F56C11.1 116 PLETLKIQVPLCDNV-------FDKEC---------E-----GKTEIPFT 144
RSlpaprtgpqcrlGgpReQlNqaTayiDaSpiYGssaeearklRaFqgG
R+ ++ tg + + +pReQ+N+ T++iD+S+iYG + + +lR+F+ G
F56C11.1 145 RAKYDKATG-NGLN-SPREQINERTSWIDGSFIYGTTQPWVSSLRSFKQG 192
lLktspdnggpvrlgrdllPldentqdcgsCvyprsaagsgCfiaGDdRv
+L + + p ++ Pl++ ++ + ++ r + + f+ GD Rv
F56C11.1 193 RLAEGVPGYPPLNNP--HIPLNNPAP--PQVH--RLMSPDRLFMLGDSRV 236
nlqpgLaaLHtLflREHNRiAdaLkalNPhWdDErlFQEARkIviAqmQh
n++pgL+++ ++ R+HN+ A ++++++P+W+DE++FQ AR++viA mQ+
F56C11.1 237 NENPGLLSFGLILFRWHNYNANQIHREHPDWTDEQIFQAARRLVIASMQK 286
ItynEyLPilLGrelmkkMrANWyGLLGfgLvygplksGyVgyyngYdpn
I+ ++++P lLG ++ + + y Y p
F56C11.1 287 IIAYDFVPGLLGEDVRLS-----------N-------------YTKYMPH 312
vQYnpsianEFatAAFRfGHslipgkfplvdendkiyfgkpisnlsgsvr
v +p+i++ F +AAFRf Hs +p + l+ + k+ f++ +++ +++ r
F56C11.1 313 V--PPGISHAFGAAAFRFPHSIVPPAMLLRKRGNKCEFRTEVGG-YPALR 359
LsdlffnpselylilaeggvdqllrGlatqpaGrmLnrvDrfitdevtnk
L++ ++n+ + i +e++vd+++ G+a+q+a + r D+ +++++
F56C11.1 360 LCQNWWNAQD---IVKEYSVDEIILGMASQIA--E--RDDNIVVEDLRDY 402
LFgtrgeppfglDLasinIqRGRDhGlpsYNeyRefCGLpratsFeDLtd
+Fg++ ++++lD+++ I+RGRD+G+p+YNe+R+ +GL + +++e +++
F56C11.1 403 IFGPM--HFSRLDVVASSIMRGRDNGVPPYNELRRTFGLAP-KTWETMNE 449
lisp.deenlarLkslYendvdDvDLyVGgllEkpvpGglvGpTfaCIia
++ + ++++++Lk+lY+ ++ +D yVGg+lE G G+ f +Ii
F56C11.1 450 DFYKkHTAKVEKLKELYGGNILYLDAYVGGMLEGGENG--PGELFKEIIK 497
eQFqRlrrGDRFwYEngrgkpsgFTpeVQLaeiRKtsLarliCdNtdvlt
+QF R r+GDRFw+En+ ++ FT e + + i ++L ++i +td+ +
F56C11.1 498 DQFTRIRDGDRFWFENKL--NGLFTDE-EVQMIHSITLRDIIKATTDIDE 544
<-*
F56C11.1 - -
Pox_T4_N: domain 1 of 1, from 630 to 636: score 3.6, E = 9.9
*->ifayddc<-*
+fa+ddc
F56C11.1 630 DFANDDC 636
efhand: domain 1 of 3, from 803 to 816: score 1.5, E = 1.6e+02
*->kIsfeEfkaalkkl<-*
+Is+eE+ +a+ ++
F56C11.1 803 TISREELASAMGMK 816
efhand: domain 2 of 3, from 821 to 849: score 4.5, E = 23
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
+k++F++ k + +sf+Ef+++l+++
F56C11.1 821 FVKRMFAMTAKHNEDSLSFNEFLTVLREF 849
Focal_AT: domain 1 of 1, from 868 to 882: score 3.2, E = 4.4
*->emAqklLnkDLaELi<-*
e+ k+L kDLaEL+
F56C11.1 868 EGKNKVLRKDLAELV 882
efhand: domain 3 of 3, from 857 to 885: score 10.3, E = 0.6
*->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
+l+ +Fk+ D g k+ ++++ +++k+l
F56C11.1 857 KLQTLFKMCDLEGKNKVLRKDLAELVKSL 885
IBV_3A: domain 1 of 1, from 1032 to 1061: score 5.1, E = 2.5
*->miqsPisFLivLiLLnWCKLvLsCFkEfvlA<-*
+sF + LiLL C+ ++ +E v+A
F56C11.1 1032 -AAGALSFCMALILLTVCRNIITLLRETVIA 1061
MgpC: domain 1 of 1, from 1115 to 1126: score 5.3, E = 1.9
*->MGssavPSlWYW<-*
Gs+++PS+ YW
F56C11.1 1115 FGSNFLPSISYW 1126
[output cut off at A = 10 top alignments]