Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F56C9.1
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Query: F56C9.1 CE01319 status:Partially_confirmed SW:P48727 protein_id:AAK18957.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Metallophos Calcineurin-like phosphoesterase 158.6 1e-43 1
Somatostatin Somatostatin/Cortistatin family 4.3 10 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Somatostatin 1/1 148 154 .. 12 18 .] 4.3 10
Metallophos 1/1 56 251 .. 1 124 [] 158.6 1e-43
Alignments of top-scoring domains:
Somatostatin: domain 1 of 1, from 148 to 154: score 4.3, E = 10
*->WKtftsC<-*
WKtft C
F56C9.1 148 WKTFTDC 154
Metallophos: domain 1 of 1, from 56 to 251: score 158.6, E = 1e-43
*->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
+++ ++gD+Hg+++dll+l+e ++ ++ ++lflGD+vdrg++sle+
F56C9.1 56 APLKICGDVHGQYYDLLRLFEYGgFpPESNYLFLGDYVDRGKQSLET 102
llllfalklkapgpvylvrGNHDfdsgnsvy..............welfl
++ll+a+k+k+p +++l+rGNH+++s+n+ y++++ + ++ + w++f
F56C9.1 103 ICLLLAYKIKYPENFFLLRGNHECASINRIYgfydeckrryniklWKTFT 152
eef.lllla.lvdgkillvHgglspd........................
++f++l+ a ++d ki+++Hgglspd + + ++ ++ + ++ + +
F56C9.1 153 DCFnCLPVAaIIDEKIFCCHGGLSPDlqsmeqirrimrptdvpdqgllcd 202
............................leellk.ngvdlvirGHtH.p<
+++++++ ++++++++ + +++ ++++l ++++dl++r+H+ +
F56C9.1 203 llwsdpdkdvtgwgendrgvsftfgpevVAKFLHkHDLDLICRAHQVvE 251
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F56C9.1 - -