Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F56C9.1
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Query:  F56C9.1  CE01319    status:Partially_confirmed SW:P48727 protein_id:AAK18957.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Metallophos  Calcineurin-like phosphoesterase           158.6      1e-43   1
Somatostatin Somatostatin/Cortistatin family              4.3         10   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Somatostatin   1/1     148   154 ..    12    18 .]     4.3       10
Metallophos    1/1      56   251 ..     1   124 []   158.6    1e-43

Alignments of top-scoring domains:
Somatostatin: domain 1 of 1, from 148 to 154: score 4.3, E = 10
                   *->WKtftsC<-*
                      WKtft C
     F56C9.1   148    WKTFTDC    154

Metallophos: domain 1 of 1, from 56 to 251: score 158.6, E = 1e-43
                   *->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev
                      +++ ++gD+Hg+++dll+l+e ++ ++  ++lflGD+vdrg++sle+
     F56C9.1    56    APLKICGDVHGQYYDLLRLFEYGgFpPESNYLFLGDYVDRGKQSLET 102

                   llllfalklkapgpvylvrGNHDfdsgnsvy..............welfl
                   ++ll+a+k+k+p +++l+rGNH+++s+n+ y++++  +  ++ + w++f
     F56C9.1   103 ICLLLAYKIKYPENFFLLRGNHECASINRIYgfydeckrryniklWKTFT 152

                   eef.lllla.lvdgkillvHgglspd........................
                   ++f++l+ a ++d ki+++Hgglspd  + +  ++  ++ + ++ +   +
     F56C9.1   153 DCFnCLPVAaIIDEKIFCCHGGLSPDlqsmeqirrimrptdvpdqgllcd 202

                   ............................leellk.ngvdlvirGHtH.p<
                     +++++++  ++++++++ +   +++ ++++l ++++dl++r+H+  +
     F56C9.1   203 llwsdpdkdvtgwgendrgvsftfgpevVAKFLHkHDLDLICRAHQVvE  251

                   -*

     F56C9.1     -    -



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