hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F56D1.7
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Query:  F56D1.7  CE27175  locus:daz-1  status:Confirmed SW:Q20870 protein_id:AAK68389.1

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N
-------- -----------                                    -----    ------- ---
rrm      RNA recognition motif. (a.k.a. RRM, RBD, or     66.0    5.6e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
rrm        1/1      68   139 ..     1    77 []    66.0  5.6e-18

Alignments of top-scoring domains:
rrm: domain 1 of 1, from 68 to 139: score 66.0, E = 5.6e-18
                   *->lfVgNLppdvteedLkdlFskfGpivsikivkDhiekpketgkskGf
                      +fVg++p+++te +L+++F+kf  ++++k+vk      +  g+skG+
     F56D1.7    68    IFVGGFPTSTTETELREHFEKFFAVKDVKMVK------SLDGQSKGY 108

                   aFVeFeseedAekAlealnG.kelggrklrv<-*
                   +F++Fe+e++Ae   +   ++ e+++rkl
     F56D1.7   109 GFITFETEDQAEEIRKLTPKqLEFRSRKLNL    139

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