Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F56F3.5
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Query: F56F3.5 CE00664 locus:rps-1 Ribosomal protein S3a (human) homolog. status:Confirmed SW:P48154 protein_id:CAA83605.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Ribosomal_S3Ae Ribosomal S3Ae family 487.0 1.5e-142 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Ribosomal_S3Ae 1/1 10 220 .. 1 215 [] 487.0 1.5e-142
Alignments of top-scoring domains:
Ribosomal_S3Ae: domain 1 of 1, from 10 to 220: score 487.0, E = 1.5e-142
*->kgKkgrKvkkVvDpFtrKdWYdIkAPnmFgnrnvGkTLvnrtqGtKi
+gKkg+K kk+vDpF+rK+WYdIkAPnmF++r+vGkTL+nrtqGtKi
F56F3.5 10 MGKKGGK-KKAVDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKI 55
AsdgLkGRvfEvsLaDLqgDpseehsfrKlkLkvedVqGknalTnFhGmd
As+gLkGRvfEvsL+DL+++ e++frK+kL++edVqGkn+lTnFh+m+
F56F3.5 56 ASEGLKGRVFEVSLGDLNNS---EADFRKFKLIAEDVQGKNVLTNFHAMS 102
lTtDklrSlvRkwqSlIEAivdVkTtDGYkLRvfaiafTkkranqvKkts
+T+Dkl+S+v+kw++lIEA+++VkTtDGY+LRvf+iafTkk++nqvKkts
F56F3.5 103 MTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTS 152
YAqssqiraIRkkMeeiikeeasekdlkqlVqklipgsIakeIekackkI
Y+++s+ir+IR++M+ +i++e++++dlk++V+klip+sI+k+Iek+c+k+
F56F3.5 153 YTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKL 202
YPLqnVeIrKvkvLkePk<-*
YPLq+V+IrKvk++k+Pk
F56F3.5 203 YPLQEVYIRKVKIIKRPK 220