hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F57B7.4
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F57B7.4  CE31010  locus:mig-17 zinc metallopeptidase (M12B family) status:Confirmed TN:CAA98493 protein_id:CAA98493.3

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N
--------    -----------                                 -----    ------- ---
Reprolysin  Reprolysin (M12B) family zinc metalloprot    29.1    2.1e-06   1
Fragilysin  Fragilysin metallopeptidase (M10C) entero     3.5        3.3   1
IPT         Isopentenyl transferase                       3.4          6   1
IncFII_repA IncFII RepA protein family                    2.9        8.6   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
IPT           1/1     138   152 ..   222   240 .]     3.4        6
Fragilysin    1/1     299   312 ..   334   347 ..     3.5      3.3
Reprolysin    1/1     248   321 ..    87   156 ..    29.1  2.1e-06
IncFII_repA   1/1     467   497 ..   197   227 ..     2.9      8.6

Alignments of top-scoring domains:
IPT: domain 1 of 1, from 138 to 152: score 3.4, E = 6
                   *->QEqeFPltPAtalewgrgp<-*
                      QE++ Pl+     +w+++
     F57B7.4   138    QERDCPLW----ISWAEEE    152

Fragilysin: domain 1 of 1, from 299 to 312: score 3.5, E = 3.3
                   *->vlAHElGHlLGAeH<-*
                      ++AHE+GH LGA H
     F57B7.4   299    IMAHEIGHSLGALH    312

Reprolysin: domain 1 of 1, from 248 to 321: score 29.1, E = 2.1e-06
                   *->sHDnAqLLtgidf.....dgntiGaAyvggmCspkrSvGVvqdhspi
                      +H +A L+t  d+ + +++  t+G+Ayvg +C    S  Vv+d
     F57B7.4   248    RHEHAVLITKFDLisingNSATQGMAYVGNICENGDSSSVVEDI--G 292

                   vllvAvtMAHELGHNLGmtHDdknk.dgC<-*
                     l + +MAHE+GH+LG  HD+ + + +C
     F57B7.4   293 AGLTSLIMAHEIGHSLGALHDGAYEtAEC    321

IncFII_repA: domain 1 of 1, from 467 to 497: score 2.9, E = 8.6
                   *->rrnkdiriksilklrkseknffisfkdakki<-*
                      +  kdi  k + k++ s+++ + + kd+++i
     F57B7.4   467    MDCKDINSKTCSKYSTSKLKHYCKSKDFREI    497

[DB home][top]