Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F57B9.2
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Query: F57B9.2 CE01337 status:Partially_confirmed TR:Q20937 protein_id:AAA21168.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Not1 CCR4-Not complex component, Not1 946.1 9.6e-281 1
Papilloma_E5 Papillomavirus E5 7.8 0.74 1
Pico_P1A Picornavirus coat protein (VP4) 7.8 1.4 1
UPF0086 Domain of unknown function UPF0086 6.4 1.6 1
SeqA SeqA protein 4.8 1.6 1
MadL Malonate transporter MadL subunit 4.3 5.1 1
UPF0114 Uncharacterized protein family, UPF0114 3.6 4.1 1
Herpes_UL7 Herpesvirus UL7 like 3.6 8.5 1
Bcl-2 Apoptosis regulator proteins, Bcl-2 fam 1.5 7.6 1
SUFU Suppressor of fused protein (SUFU) 1.4 10 1
Lipoprotein_8 Hypothetical lipoprotein (MG045 family) 1.1 6.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
UPF0114 1/1 44 64 .. 155 175 .] 3.6 4.1
Pico_P1A 1/1 325 337 .. 51 63 .. 7.8 1.4
MadL 1/1 346 355 .. 1 10 [. 4.3 5.1
Herpes_UL7 1/1 358 383 .. 1 26 [. 3.6 8.5
SeqA 1/1 918 934 .. 187 203 .] 4.8 1.6
Bcl-2 1/1 903 937 .. 1 37 [. 1.5 7.6
Lipoprotein_8 1/1 1272 1296 .. 1 33 [. 1.1 6.4
Papilloma_E5 1/1 1458 1472 .. 60 74 .] 7.8 0.74
SUFU 1/1 1909 1928 .. 483 507 .] 1.4 10
UPF0086 1/1 1945 1959 .. 1 15 [. 6.4 1.6
Not1 1/1 2092 2481 .. 1 415 [] 946.1 9.6e-281
Alignments of top-scoring domains:
UPF0114: domain 1 of 1, from 44 to 64: score 3.6, E = 4.1
*->tFVvSAlgmAYtDkiakstnh<-*
+FV+ AY+D+++ + ++
F57B9.2 44 GFVLNSCSCAYIDNLLAHSSI 64
Pico_P1A: domain 1 of 1, from 325 to 337: score 7.8, E = 1.4
*->KFTePVkDimkkg<-*
KFT+PVkD+++ +
F57B9.2 325 KFTQPVKDALLDS 337
MadL: domain 1 of 1, from 346 to 355: score 4.3, E = 5.1
*->MIIYGVALLa<-*
M IYGV LL+
F57B9.2 346 MEIYGVSLLS 355
Herpes_UL7: domain 1 of 1, from 358 to 383: score 3.6, E = 8.5
*->prlvcevrevpilprlvLevsvldni<-*
+v+e+++ pi++ +v+ +sv ++i
F57B9.2 358 ENFVTELKQAPIQKKMVTNNSVANAI 383
SeqA: domain 1 of 1, from 918 to 934: score 4.8, E = 1.6
*->qsMelPadLIEkVrsyi<-*
qsM + +d+ E+ sy+
F57B9.2 918 QSMTFAEDIQEEANSYF 934
Bcl-2: domain 1 of 1, from 903 to 937: score 1.5, E = 7.6
*->LrraGdelekrveraFssmsrqlhitpetArelFtqV<-*
++a++ +++ + ++F+sm+ ++i e+A ++F+++
F57B9.2 903 -AAAAANVQQPMNEDFQSMTFAEDIQ-EEANSYFEKI 937
Lipoprotein_8: domain 1 of 1, from 1272 to 1296: score 1.1, E = 6.4
*->MKkqlKylfillgitsLLvlssiltaCsqsskl<-*
K q +l+++ +i+ iltaCs ++ l
F57B9.2 1272 -KGQAELLYVVPFIS------KILTACS-KTSL 1296
Papilloma_E5: domain 1 of 1, from 1458 to 1472: score 7.8, E = 0.74
*->LPlflIHlHAqyLlq<-*
LPlf +H HA +L+
F57B9.2 1458 LPLFQLHPHAKHLVR 1472
SUFU: domain 1 of 1, from 1909 to 1928: score 1.4, E = 10
*->glklivDQPepvLPtrmsldaaPga<-*
+++l QP+ +LP ++aaP
F57B9.2 1909 HAGLQQ-QPPVALP----MEAAPMP 1928
UPF0086: domain 1 of 1, from 1945 to 1959: score 6.4, E = 1.6
*->mltprnIlrHELIGL<-*
m ++I+ +E+IGL
F57B9.2 1945 MTAKVEIIMREWIGL 1959
[output cut off at A = 10 top alignments]