Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F57F4.4
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Query: F57F4.4 CE11344 status:Partially_confirmed TR:Q94247 protein_id:AAB09167.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
ET ET module 2665.7 0 21
CBM_1 Fungal cellulose binding domain 6.2 4.7 1
Colipase_C Colipase, C-terminal domain 5.9 2.6 1
Bacterial_PQQ PQQ enzyme repeat 5.9 5.2 1
CUE CUE domain 5.3 6.9 1
ICMT Isoprenylcysteine carboxyl methyltransf 3.3 8.6 1
thaumatin Thaumatin family 0.8 3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ET 1/21 23 103 .. 1 93 [] 80.8 2.7e-20
CBM_1 1/1 141 155 .. 15 29 .] 6.2 4.7
ET 2/21 121 210 .. 1 93 [] 94.6 1.9e-24
Bacterial_PQQ 1/1 265 302 .. 1 37 [] 5.9 5.2
ET 3/21 226 318 .. 1 93 [] 131.0 2.2e-35
ET 4/21 329 411 .. 1 93 [] 107.7 2.3e-28
Colipase_C 1/1 440 451 .. 34 45 .] 5.9 2.6
ET 5/21 430 512 .. 1 93 [] 147.2 2.9e-40
ET 6/21 520 607 .. 1 93 [] 134.1 2.6e-36
ET 7/21 622 704 .. 1 93 [] 147.1 3.1e-40
ET 8/21 713 794 .. 1 93 [] 134.4 2e-36
ET 9/21 811 893 .. 1 93 [] 144.0 2.7e-39
ET 10/21 905 990 .. 1 93 [] 131.9 1.1e-35
thaumatin 1/1 1016 1045 .. 99 129 .. 0.8 3
ET 11/21 1011 1093 .. 1 93 [] 150.6 2.7e-41
ET 12/21 1103 1186 .. 1 93 [] 146.0 6.5e-40
ET 13/21 1207 1289 .. 1 93 [] 156.0 6.6e-43
ET 14/21 1300 1385 .. 1 93 [] 138.8 1e-37
ET 15/21 1401 1483 .. 1 93 [] 151.9 1.1e-41
ET 16/21 1493 1572 .. 1 93 [] 132.1 1e-35
ET 17/21 1593 1675 .. 1 93 [] 158.2 1.4e-43
ET 18/21 1685 1766 .. 1 93 [] 136.9 3.6e-37
ET 19/21 1781 1864 .. 1 93 [] 138.8 9.7e-38
CUE 1/1 1894 1909 .. 28 43 .] 5.3 6.9
ET 20/21 1872 1953 .. 1 93 [] 122.2 9.6e-33
ICMT 1/1 1962 1969 .. 240 247 .] 3.3 8.6
ET 21/21 1971 2053 .. 1 93 [] 133.6 3.5e-36
Alignments of top-scoring domains:
ET: domain 1 of 21, from 23 to 103: score 80.8, E = 2.7e-20
*->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
C vG+++ s++ +T++s+++++C+G C++++++++ +G + l+t
F57F4.4 23 CLVGNLIVSENVITSKSVELRECEGLCRKQTVKSPSGG----LVLLT 65
CdPvsvCrsLglnndnyisCstlengnevtGCCCdntdnCndptvg<-*
C++++++++++ ++ +Cs+ e++ t C+C+ +++Cn+ + +
F57F4.4 66 CEENKLMAFINKGQ----DCSSSELE---TSCFCE-DELCNKVDLE 103
CBM_1: domain 1 of 1, from 141 to 155: score 6.2, E = 4.7
*->tCasGltCvklNdyY<-*
tC++G +C+ ++ Y
F57F4.4 141 TCSPGNVCTSVSGVY 155
ET: domain 2 of 21, from 121 to 210: score 94.6, E = 1.9e-24
*->CYvGiyvnsgtngTissgaeqaCdG..eCaSvslnttvNGqahnatl
CYvG+y+n++t+g + sg++++C+ ++ C+Svs+ ++NG ++a++
F57F4.4 121 CYVGFYANNTTPG-FGSGDTVTCSPgnVCTSVSG--VYNG--YDAAA 162
YtCdPvsvCrsLglnnd.n.yisCstlengnevtGCCCdntdnCndptvg
Y+C+P+++C+s++ n d+n++i C++l ++n ++GCCC+ +++C +++
F57F4.4 163 YACMPQGLCDSIFPNIDpNnPIACTNLAGTN-IQGCCCY-KQDCTSLAPM 210
<-*
F57F4.4 - -
Bacterial_PQQ: domain 1 of 1, from 265 to 302: score 5.9, E = 5.2
*->gvvyvgtadGylyAlDadTGkvlWkfktggpvds.pvt<-*
g ++v+++ ++++Al++d+G + +++ +v+ +t
F57F4.4 265 GEIFVCDPVNVFTALNLDNGCMNLDTQNINGVPTaLIT 302
ET: domain 3 of 21, from 226 to 318: score 131.0, E = 2.2e-35
*->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
CY+Gi+vn g ++ g++++C GeC+S++++tt+NG++++ +++
F57F4.4 226 CYQGISVN-GAL--LYGGSFSQCLGECGSARIRTTYNGANVWGEIFV 269
CdPvsvCrsLglnndnyisCstlengn.......evtGCCCdntdnCndp
CdPv+v+++L+l+n C++l+++n ++ ++ +tGC C+++d+C+dp
F57F4.4 270 CDPVNVFTALNLDN----GCMNLDTQNingvptaLITGCACNSMDKCIDP 315
tvg<-*
tv+
F57F4.4 316 TVV 318
ET: domain 4 of 21, from 329 to 411: score 107.7, E = 2.3e-28
*->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
C vG+y++ t+ + gae++C+G+C++v++n NG ++++++t
F57F4.4 329 CAVGLYNG--TT---WLGAEMNCQGRCGRVRFN--ANG--QQVSYFT 366
CdPvsvCrsLglnndnyisCstlengn...evtGCCCdntdnCndptvg<
C+P++vC+++gl++ + ++++n+++++e++ +CC++++nCn+++++
F57F4.4 367 CMPYDVCAGFGLAS----TEGQTYNPPqdeELEVYCCSASNNCNVNNPY 411
-*
F57F4.4 - -
Colipase_C: domain 1 of 1, from 440 to 451: score 5.9, E = 2.6
*->aitntnyGiChd<-*
+itn yG+C+
F57F4.4 440 SITNSAYGLCQG 451
ET: domain 5 of 21, from 430 to 512: score 147.2, E = 2.9e-40
*->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
CY Gi+vn g++ i++ a+++C+GeCaS+s++tt+++q+hnat+Yt
F57F4.4 430 CYGGIWVN-GVS--ITNSAYGLCQGECASASFTTTFANQVHNATIYT 473
CdPvsvCrsLglnndnyisCstlengnevtGCCCdntdnCndptvg<-*
CdPv++C++ g++n sC+++ +g v++CCCd +d+C+dp++g
F57F4.4 474 CDPVTMCQQAGISN----SCGSVLGG--VNACCCD-NDLCIDPNRG 512
ET: domain 6 of 21, from 520 to 607: score 134.1, E = 2.6e-36
*->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
CY+G+++ + + +++g+ q+CdG+C+S+++ +vNG +nat+Y+
F57F4.4 520 CYSGVSIP-QDK--YNTGGDQFCDGWCGSLNS--VVNG--KNATVYY 559
CdPvsvCrsLglnndn.yisCstlengn.evtGCCCdntdnCndptvg<-
C+Pv++Cr++gl+++++y++C+++++ +++vtGCCC++tdnC+ p+ +
F57F4.4 560 CAPVGMCRYFGLGFGGsYGNCGQIPGADpQVTGCCCSETDNCLAPAGV 607
*
F57F4.4 - -
ET: domain 7 of 21, from 622 to 704: score 147.1, E = 3.1e-40
*->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
CY Gi++n g+n is+ ++++CdGeC+Svsl +tvN+++h+atlYt
F57F4.4 622 CYEGIHLN-GQN--ISQPYYRMCDGECVSVSLGGTVNNNSHYATLYT 665
CdPvsvCrsLglnndnyisCstlengnevtGCCCdntdnCndptvg<-*
CdP+s C+++gl n +Cst++n +t+CCCd ++ C+dpt++
F57F4.4 666 CDPSSACAAMGLRN----NCSTIDNS--LTACCCD-SNECIDPTYN 704
[output cut off at A = 10 top alignments]