Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F57F4.4
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Query:  F57F4.4  CE11344    status:Partially_confirmed TR:Q94247 protein_id:AAB09167.1

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N
--------      -----------                               -----    ------- ---
ET            ET module                                2665.7          0  21
CBM_1         Fungal cellulose binding domain             6.2        4.7   1
Colipase_C    Colipase, C-terminal domain                 5.9        2.6   1
Bacterial_PQQ PQQ enzyme repeat                           5.9        5.2   1
CUE           CUE domain                                  5.3        6.9   1
ICMT          Isoprenylcysteine carboxyl methyltransf     3.3        8.6   1
thaumatin     Thaumatin family                            0.8          3   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
ET              1/21     23   103 ..     1    93 []    80.8  2.7e-20
CBM_1           1/1     141   155 ..    15    29 .]     6.2      4.7
ET              2/21    121   210 ..     1    93 []    94.6  1.9e-24
Bacterial_PQQ   1/1     265   302 ..     1    37 []     5.9      5.2
ET              3/21    226   318 ..     1    93 []   131.0  2.2e-35
ET              4/21    329   411 ..     1    93 []   107.7  2.3e-28
Colipase_C      1/1     440   451 ..    34    45 .]     5.9      2.6
ET              5/21    430   512 ..     1    93 []   147.2  2.9e-40
ET              6/21    520   607 ..     1    93 []   134.1  2.6e-36
ET              7/21    622   704 ..     1    93 []   147.1  3.1e-40
ET              8/21    713   794 ..     1    93 []   134.4    2e-36
ET              9/21    811   893 ..     1    93 []   144.0  2.7e-39
ET             10/21    905   990 ..     1    93 []   131.9  1.1e-35
thaumatin       1/1    1016  1045 ..    99   129 ..     0.8        3
ET             11/21   1011  1093 ..     1    93 []   150.6  2.7e-41
ET             12/21   1103  1186 ..     1    93 []   146.0  6.5e-40
ET             13/21   1207  1289 ..     1    93 []   156.0  6.6e-43
ET             14/21   1300  1385 ..     1    93 []   138.8    1e-37
ET             15/21   1401  1483 ..     1    93 []   151.9  1.1e-41
ET             16/21   1493  1572 ..     1    93 []   132.1    1e-35
ET             17/21   1593  1675 ..     1    93 []   158.2  1.4e-43
ET             18/21   1685  1766 ..     1    93 []   136.9  3.6e-37
ET             19/21   1781  1864 ..     1    93 []   138.8  9.7e-38
CUE             1/1    1894  1909 ..    28    43 .]     5.3      6.9
ET             20/21   1872  1953 ..     1    93 []   122.2  9.6e-33
ICMT            1/1    1962  1969 ..   240   247 .]     3.3      8.6
ET             21/21   1971  2053 ..     1    93 []   133.6  3.5e-36

Alignments of top-scoring domains:
ET: domain 1 of 21, from 23 to 103: score 80.8, E = 2.7e-20
                   *->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
                      C vG+++ s++ +T++s+++++C+G C++++++++ +G    + l+t
     F57F4.4    23    CLVGNLIVSENVITSKSVELRECEGLCRKQTVKSPSGG----LVLLT 65

                   CdPvsvCrsLglnndnyisCstlengnevtGCCCdntdnCndptvg<-*
                   C++++++++++ ++    +Cs+ e++   t C+C+ +++Cn+ + +
     F57F4.4    66 CEENKLMAFINKGQ----DCSSSELE---TSCFCE-DELCNKVDLE    103

CBM_1: domain 1 of 1, from 141 to 155: score 6.2, E = 4.7
                   *->tCasGltCvklNdyY<-*
                      tC++G +C+  ++ Y
     F57F4.4   141    TCSPGNVCTSVSGVY    155

ET: domain 2 of 21, from 121 to 210: score 94.6, E = 1.9e-24
                   *->CYvGiyvnsgtngTissgaeqaCdG..eCaSvslnttvNGqahnatl
                      CYvG+y+n++t+g + sg++++C+ ++ C+Svs+  ++NG  ++a++
     F57F4.4   121    CYVGFYANNTTPG-FGSGDTVTCSPgnVCTSVSG--VYNG--YDAAA 162

                   YtCdPvsvCrsLglnnd.n.yisCstlengnevtGCCCdntdnCndptvg
                   Y+C+P+++C+s++ n d+n++i C++l ++n ++GCCC+ +++C   +++
     F57F4.4   163 YACMPQGLCDSIFPNIDpNnPIACTNLAGTN-IQGCCCY-KQDCTSLAPM 210

                   <-*

     F57F4.4     -     -

Bacterial_PQQ: domain 1 of 1, from 265 to 302: score 5.9, E = 5.2
                   *->gvvyvgtadGylyAlDadTGkvlWkfktggpvds.pvt<-*
                      g ++v+++ ++++Al++d+G +   +++  +v+   +t
     F57F4.4   265    GEIFVCDPVNVFTALNLDNGCMNLDTQNINGVPTaLIT    302

ET: domain 3 of 21, from 226 to 318: score 131.0, E = 2.2e-35
                   *->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
                      CY+Gi+vn g    ++ g++++C GeC+S++++tt+NG++++ +++
     F57F4.4   226    CYQGISVN-GAL--LYGGSFSQCLGECGSARIRTTYNGANVWGEIFV 269

                   CdPvsvCrsLglnndnyisCstlengn.......evtGCCCdntdnCndp
                   CdPv+v+++L+l+n     C++l+++n ++ ++  +tGC C+++d+C+dp
     F57F4.4   270 CDPVNVFTALNLDN----GCMNLDTQNingvptaLITGCACNSMDKCIDP 315

                   tvg<-*
                   tv+
     F57F4.4   316 TVV    318

ET: domain 4 of 21, from 329 to 411: score 107.7, E = 2.3e-28
                   *->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
                      C vG+y++  t+   + gae++C+G+C++v++n   NG  ++++++t
     F57F4.4   329    CAVGLYNG--TT---WLGAEMNCQGRCGRVRFN--ANG--QQVSYFT 366

                   CdPvsvCrsLglnndnyisCstlengn...evtGCCCdntdnCndptvg<
                   C+P++vC+++gl++    + ++++n+++++e++ +CC++++nCn+++++
     F57F4.4   367 CMPYDVCAGFGLAS----TEGQTYNPPqdeELEVYCCSASNNCNVNNPY  411

                   -*

     F57F4.4     -    -

Colipase_C: domain 1 of 1, from 440 to 451: score 5.9, E = 2.6
                   *->aitntnyGiChd<-*
                      +itn  yG+C+
     F57F4.4   440    SITNSAYGLCQG    451

ET: domain 5 of 21, from 430 to 512: score 147.2, E = 2.9e-40
                   *->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
                      CY Gi+vn g++  i++ a+++C+GeCaS+s++tt+++q+hnat+Yt
     F57F4.4   430    CYGGIWVN-GVS--ITNSAYGLCQGECASASFTTTFANQVHNATIYT 473

                   CdPvsvCrsLglnndnyisCstlengnevtGCCCdntdnCndptvg<-*
                   CdPv++C++ g++n    sC+++ +g  v++CCCd +d+C+dp++g
     F57F4.4   474 CDPVTMCQQAGISN----SCGSVLGG--VNACCCD-NDLCIDPNRG    512

ET: domain 6 of 21, from 520 to 607: score 134.1, E = 2.6e-36
                   *->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
                      CY+G+++  + +  +++g+ q+CdG+C+S+++  +vNG  +nat+Y+
     F57F4.4   520    CYSGVSIP-QDK--YNTGGDQFCDGWCGSLNS--VVNG--KNATVYY 559

                   CdPvsvCrsLglnndn.yisCstlengn.evtGCCCdntdnCndptvg<-
                   C+Pv++Cr++gl+++++y++C+++++ +++vtGCCC++tdnC+ p+ +
     F57F4.4   560 CAPVGMCRYFGLGFGGsYGNCGQIPGADpQVTGCCCSETDNCLAPAGV   607

                   *

     F57F4.4     -   -

ET: domain 7 of 21, from 622 to 704: score 147.1, E = 3.1e-40
                   *->CYvGiyvnsgtngTissgaeqaCdGeCaSvslnttvNGqahnatlYt
                      CY Gi++n g+n  is+ ++++CdGeC+Svsl +tvN+++h+atlYt
     F57F4.4   622    CYEGIHLN-GQN--ISQPYYRMCDGECVSVSLGGTVNNNSHYATLYT 665

                   CdPvsvCrsLglnndnyisCstlengnevtGCCCdntdnCndptvg<-*
                   CdP+s C+++gl n    +Cst++n   +t+CCCd ++ C+dpt++
     F57F4.4   666 CDPSSACAAMGLRN----NCSTIDNS--LTACCCD-SNECIDPTYN    704

	[output cut off at A = 10 top alignments]


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