Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F57F5.2
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Query: F57F5.2 CE20887 locus:gcy-33 guanylate cyclase status:Partially_confirmed TR:P90895 protein_id:CAB01418.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
guanylate_cyc Adenylate and Guanylate cyclase catalyt 156.6 4.2e-43 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
guanylate_cyc 1/1 430 619 .. 1 226 [] 156.6 4.2e-43
Alignments of top-scoring domains:
guanylate_cyc: domain 1 of 1, from 430 to 619: score 156.6, E = 4.2e-43
*->vyaerydeVtilFaDIvgFTalssrhssNngPeevvrlLNelftrFD
e +++V+i F + +F +s + ++evv+lLN++++ D
F57F5.2 430 DHCEAFECVSIGFIRVCDFSKISLFIE----AFEVVNLLNTIYSHLD 472
elvdehkfgvyKiKTiGDaYMaasGlppaakakqtssKlaeeldedsaaH
++vd h gvyK++TiG +YM+ +G+p + ++
F57F5.2 473 SIVDTH--GVYKVETIGESYMISAGCPY------------------RDDY 502
aakla.dfALamvealqev..nvghteggpPlvLyrglqlRiGIHtGpVv
+a +++d+ L+mv +++++ ++++++ + + +GI tGpVv
F57F5.2 503 DAEMVsDCCLEMVSHIKSFeyQSHDAV-KK-------VLIKCGIFTGPVV 544
aGviGgaskrprYdvwGdTVNvASRmEStGvpgekIhVsestyrlLkele
+Gv+G ++prY+++GdTVN+ASRmES ++ I+++++t+++ +++
F57F5.2 545 GGVVG--VRTPRYCLFGDTVNTASRMESSNQTPMTIQIGQRTKDRVEKQA 592
sfqfefaleprgevsvkGkgkpGaietYfLkg<-*
s f++ p g v+vkGkg++ Y++++
F57F5.2 593 SGAFRI--KPKGNVFVKGKGDM---RVYEIEK 619