Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F57F5.4
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Query: F57F5.4 CE06002 locus:add-2 adducin status:Confirmed SW:Q20952 protein_id:CAB00100.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Aldolase_II Class II Aldolase and Adducin N-terminal 257.4 1.9e-73 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Aldolase_II 1/1 359 556 .. 1 230 [] 257.4 1.9e-73
Alignments of top-scoring domains:
Aldolase_II: domain 1 of 1, from 359 to 556: score 257.4, E = 1.9e-73
*->qelaaacrllalyGlvtgtaGniSvRvreegeqdlflIkPsGvpyde
++la+++rl +l+ +++g++++i+vRv+ + d++lI+ +G y+e
F57F5.4 359 NKLASLYRLVDLFRWSQGIYNHITVRVSTD--PDEILINAFGQLYSE 403
mtasdlvvvDldgGevleGkspketkflkPssetplHlalYrarPdvgav
++as+l++vDldg +++ G+ t+f++++++++lH+a++ rP+v++v
F57F5.4 404 VSASSLIKVDLDGTVIDGGS----TNFGVNQAGYVLHSAIHNGRPEVKCV 449
vHtHSphatalSqlgeglpplgtthadyggvipygdvpctdyagrYdeei
vH+H p ++a+S+ ++gl+p++++++++g dv++++y g i
F57F5.4 450 VHLHHPSVVAVSAQKCGLLPISQESMIVG------DVGYHEYRG-----I 488
vgdyeenTGhEkVevellqkaleapkgrpAvLlrnHGvvtwGkdaetaee
+d++ e+ ll+ +l++ ++ ++lrnHG v++G e++e+
F57F5.4 489 LIDEA--------ERALLVRDLGDRNV---MILRNHGFVVCG---ESIEH 524
Aavvaeeveraaeiqllalsagipmdplllpee<-*
A+ +++++ a+e+q++ ++g+ d++ p++
F57F5.4 525 ALSLTYHLIIACETQIRTVPGGN-TDNVHFPAQ 556