Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F58G11.2
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Query: F58G11.2 CE11402 ATP-dependent RNA helicase like status:Partially_confirmed TR:P90897 protein_id:CAB03153.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
DEAD DEAD/DEAH box helicase 196.8 1.5e-59 1
helicase_C Helicase conserved C-terminal domain 98.7 1.4e-26 1
Bmp Basic membrane protein 5.1 1.2 1
vwd von Willebrand factor type D domain 4.4 4.6 1
Glycos_transf_N 3-Deoxy-D-manno-octulosonic-acid tran 4.2 5.6 1
Chitin_synth_2 Chitin synthase 2.9 3 1
Coprogen_oxidas Coproporphyrinogen III oxidase 1.4 3.9 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
vwd 1/1 250 266 .. 149 165 .] 4.4 4.6
Chitin_synth_2 1/1 255 281 .. 522 548 .] 2.9 3
Coprogen_oxidas 1/1 335 341 .. 344 350 .] 1.4 3.9
Glycos_transf_N 1/1 604 616 .. 121 133 .. 4.2 5.6
DEAD 1/1 394 620 .. 1 207 [] 196.8 1.5e-59
Bmp 1/1 680 703 .. 88 111 .. 5.1 1.2
helicase_C 1/1 670 746 .. 1 72 [] 98.7 1.4e-26
Alignments of top-scoring domains:
vwd: domain 1 of 1, from 250 to 266: score 4.4, E = 4.6
*->GnfngepedDfrtpdGs<-*
Gn+ ge ++D+r+ + s
F58G11.2 250 GNNSGEYRNDYRSQQDS 266
Chitin_synth_2: domain 1 of 1, from 255 to 281: score 2.9, E = 3
*->EfererweaqtskdtRSelsglsrkek<-*
E+ + + +q s+d RS+ +s+ +k
F58G11.2 255 EYRNDYRSQQDSRDHRSGGNNSSSGFK 281
Coprogen_oxidas: domain 1 of 1, from 335 to 341: score 1.4, E = 3.9
*->lkPRDWV<-*
++PRDWV
F58G11.2 335 RAPRDWV 341
Glycos_transf_N: domain 1 of 1, from 604 to 616: score 4.2, E = 5.6
*->iPliLvNARLSer<-*
i+++L+N+RLS r
F58G11.2 604 IKIVLANGRLSKR 616
DEAD: domain 1 of 1, from 394 to 620: score 196.8, E = 1.5e-59
*->kalkklgfekptpiQaeaipailegrDvlvqApTGSGKTlAfllPil
+ lk+ +++ + iQ + ip +l g+Dvl+qA T +GKT+Af+lPi+
F58G11.2 394 ETLKRIKYNNVRTIQGAMIPQVLDGHDVLGQAETSAGKTAAFGLPII 440
eallkg.............pqalvlaPTRELAnQiyeelkklgkgl.lrv
+++l+++++++++ +++++p al+laPTRELA Qi+e l+ ++++++++v
F58G11.2 441 DKILRMdeetrnkarqddgPLALILAPTRELAAQIHEALRTYCQNTdIIV 490
alltgg.skkeqrrklrkgpdilvaTPgrlldhlengkllekrlslknlk
l +g++++++ ++r+g+dil++T gr++d+ + ++sl +l+
F58G11.2 491 LLSYGQsDRARSLNEIRNGCDILIGTCGRIMDFTVKS-----HISLLHLR 535
llVlDEADrmldmgk...ahgFgpdleeilsr.lpknrqtllfSATlpne
+lV+DEADr+l+ +k++++++ g +++ + ++ ++rqt++ SAT++
F58G11.2 536 FLVFDEADRLLQDMKkdpLGHLGAIIKDAGFMeSAATRQTIMTSATFNAS 585
verlaklflknpvevs.....vkse.ptplrikqk<-*
v +a++ +k+ + + v ++ ++r+ +
F58G11.2 586 VMTVANELMKRLPGQDemikiVLANgRLSKRVNLE 620
Bmp: domain 1 of 1, from 680 to 703: score 5.1, E = 1.2
*->ttdedyesllenlkdkgyDLIvlt<-*
++ +++e+l++++k+++++L+v+t
F58G11.2 680 RSQDMREKLINDFKSNRVNLLVTT 703
helicase_C: domain 1 of 1, from 670 to 746: score 98.7, E = 1.4e-26
*->gikvarlhGglsqeeReeilekFrngkskvLvaTdvaarGiDipdvn
g + lhG++sq+ Re+++++F+++++++Lv+Td+++rGiD+ d++
F58G11.2 670 GMLAQTLHGDRSQDMREKLINDFKSNRVNLLVTTDLLSRGIDVSDLD 716
lVInydl.....pwnpesyiQRiGRaGRaG<-*
VIn+dl++++++ + +++i+R+GR+GR G
F58G11.2 717 RVINFDLpdgdpDQGADTFIHRAGRTGRTG 746