Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F58G4.1
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Query: F58G4.1 CE07306 myosin status:Partially_confirmed TR:Q21000 protein_id:AAG24132.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
myosin_head Myosin head (motor domain) 1423.6 0 1
Myosin_tail Myosin tail 1313.1 0 3
Myosin_N Myosin N-terminal SH3-like domain 76.4 6.4e-22 1
IQ IQ calmodulin-binding motif 13.9 0.054 1
Seryl_tRNA_N Seryl-tRNA synthetase N-terminal doma 8.6 1.4 2
UPF0042 Uncharacterised P-loop ATPase protein 7.5 0.3 1
DNA_mis_repair DNA mismatch repair protein, C-termin 4.9 4.9 1
ABC_tran ABC transporter 4.8 3.1 1
Fanconi Fanconi anaemia group C protein 4.7 0.74 1
dNK Deoxynucleoside kinase 4.1 7.4 1
DUF106 Integral membrane protein DUF106 3.5 5.6 1
glu_cys_ligase Glutamate-cysteine ligase 2.8 9.1 1
Astro_capsid Astrovirus capsid protein precursor 2.5 2.8 1
Peptidase_M10_N Matrix metalloprotease, N-terminal do 2.1 9.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Myosin_N 1/1 30 73 .. 1 48 [] 76.4 6.4e-22
UPF0042 1/1 168 181 .. 1 15 [. 7.5 0.3
ABC_tran 1/1 167 181 .. 1 15 [. 4.8 3.1
myosin_head 1/1 83 776 .. 1 734 [] 1423.6 0
IQ 1/1 792 812 .. 1 21 [] 13.9 0.054
Myosin_tail 1/3 875 904 .. 1 30 [. -5.3 8.3e+02
dNK 1/1 950 987 .. 133 170 .] 4.1 7.4
Myosin_tail 2/3 946 1077 .. 143 281 .. -25.7 5.9e+04
DNA_mis_repair 1/1 1103 1123 .. 128 148 .] 4.9 4.9
Seryl_tRNA_N 1/2 1119 1128 .. 46 55 .] -0.1 3.2e+02
Seryl_tRNA_N 2/2 1382 1410 .. 24 55 .] 12.0 0.18
Peptidase_M10_N 1/1 1399 1414 .. 38 59 .. 2.1 9.2
glu_cys_ligase 1/1 1590 1604 .. 379 393 .] 2.8 9.1
DUF106 1/1 1643 1664 .. 56 76 .. 3.5 5.6
Fanconi 1/1 1635 1667 .. 564 596 .] 4.7 0.74
Astro_capsid 1/1 1640 1682 .. 747 789 .] 2.5 2.8
Myosin_tail 3/3 1078 1937 .. 1 864 [] 1365.0 0
Alignments of top-scoring domains:
Myosin_N: domain 1 of 1, from 30 to 73: score 76.4, E = 6.4e-22
*->KknVWVpDekegfikgeIkesteGdkVtVktedtrsGktvtvkkDdv
KknVWV+D++egfi++eIk s++Gd+V+V t++ G ++t+kkDd+
F58G4.1 30 KKNVWVADPEEGFIAAEIK-SSKGDTVVVVTSK---GVEKTIKKDDA 72
q<-*
q
F58G4.1 73 Q 73
UPF0042: domain 1 of 1, from 168 to 181: score 7.5, E = 0.3
*->ielvivtGrSGAGKs<-*
+ +++tG SGAGK+
F58G4.1 168 -QSMLITGESGAGKT 181
ABC_tran: domain 1 of 1, from 167 to 181: score 4.8, E = 3.1
*->GevlalvGpNGaGKS<-*
++ ++G++GaGK+
F58G4.1 167 NQSMLITGESGAGKT 181
myosin_head: domain 1 of 1, from 83 to 776: score 1423.6, E = 0
*->vEDmveLtyLnEpsvlhNLKkRYksdlIYTYsGlvLvsvNPYkrLpq
+EDm++Lt+Ln++svlhNL++RY+s++IYTYsGl++v++NPYkrLp
F58G4.1 83 TEDMANLTFLNDASVLHNLRQRYYSMMIYTYSGLFCVVINPYKRLP- 128
iYteeiiakYrGKrryElPPHiFAiADeAYRsMlsdkeNQsilISGESGA
iY+e++ ++Y GKrr+E+PPH+FA++DeAYR+M +d+eNQs+lI+GESGA
F58G4.1 129 IYSESVCQMYLGKRRNEMPPHLFAVSDEAYRNMTNDRENQSMLITGESGA 178
GKTEntKkvmqYlAaVsggnsgngeev.psvkvgrvEdqILqsNPiLEAF
GKTEntKkv++Y+A V++++++n+++++ ++ ++EdqI+q+NP+LEAF
F58G4.1 179 GKTENTKKVISYFAMVGASQQSNKKKSkKDKAQVSLEDQIVQTNPVLEAF 228
GNAKTtRNNNSSRFGKyieIqFdktGkivGakIenYLLEKSRVvyQtegE
GNAKT+RNNNSSRFGK+i+I+F+ +Gk +Ga+Ie+YLLEKSRV++Q++gE
F58G4.1 229 GNAKTVRNNNSSRFGKFIRIHFNTGGKVAGADIEHYLLEKSRVIKQAPGE 278
RNFHIFYQLLaGasqqnlkkeLkLtndpedYhYLnqggevkpcytvdGiD
R++HIFYQ+++ a l+++L Lt+ ++ Y +++q++ +t+dG+D
F58G4.1 279 RSYHIFYQIYSDAVKG-LREKLFLTRPIKEYTFVSQAE-----VTIDGVD 322
DsegnveeFketrkAmdilGftdeeqrsIFrivAaILhlGNikFkqrrke
D+ ee+ +t++A+di+ ft++e+ + F i+A+I+h+G++kFkqr++e
F58G4.1 323 DK----EEMLITDEAFDIMKFTATEKSELFAITAGIMHMGELKFKQRPRE 368
eaaipddnnadtkalekaaeLlGvdatelekALlsrriktGtegrkStvt
e+a+ + +k+ e a+ L++v ++++ +ALl++r+k+Gte+ v+
F58G4.1 369 EQAELEE----GKEGELACKLYCVESEKFINALLKPRVKVGTEW----VN 410
kpqnveQAsyARDALAKalYsRLFdWIVnrINktLdfkakegqdasfIGV
k+qn Q+++A++ALAKal++R+F W+++r+NktLd ++ ++ ++fIGV
F58G4.1 411 KGQNLDQVNWAVGALAKALFARMFSWLIRRCNKTLDAQDLSR--DFFIGV 458
LDIyGFEIFekNSFEQLCINYvNEKLQQfFNhhmFklEQEEYkrEGIeWt
LDI+GFEIF+ NSFEQL+IN+vNEKLQQfFNhhmF+lEQEEYkrEGI+W+
F58G4.1 459 LDIAGFEIFDLNSFEQLWINFVNEKLQQFFNHHMFVLEQEEYKREGIQWE 508
fIdFgdNLQpcIDLIEkKsPpGILsLLDEeClfPkaqSGtDqtFldKLys
fIdFg++LQ+cI+LIEk+ +GI s+LDEeC++Pka +D t+++KL++
F58G4.1 509 FIDFGLDLQACIELIEKP--LGIVSMLDEECIVPKA---SDLTLASKLND 553
tfskhpahfekfsPrfrqkksg.ahFiikHYAGdVeYnvegFleKNKDpL
++++++++f+k Pr++++k+ +ah +i+HYAG+V+Ynv g+leKNKDpL
F58G4.1 554 QHLGKHPNFQK--PRPPKGKQAeAHLAIVHYAGTVRYNVKGWLEKNKDPL 601
fddlisllksSs.npllaeLFpdeetlagpfeadpsslskkrksgskNks
+d+ + +lk+ ++n l+a+L+ d++t++ ++a++ ++ +
F58G4.1 602 NDTAVTVLKANKgNQLMADLWADYATQEDVAAAAKDGKKAVG-------- 643
tgkktkksnfiTvGaqfKeslneLMktLsstnLPHFvRCIkPNekKkagv
+kk+k+++f+Tv+++++esln+LM +L +t+ PHF+RCI+PNe Kkag+
F58G4.1 644 -KKKGKSASFMTVSMMYRESLNKLMHMLHQTH-PHFIRCIIPNELKKAGM 691
fDaslVlhQLrclGVLEgiRIrRaGFPnRitfdeFlqRYriLapktwPkw
+Da lVl+QL+c+GVLEgiRI+R+GFPnR++f +F+qRY++La++++ k
F58G4.1 692 IDANLVLNQLTCNGVLEGIRICRKGFPNRMPFLDFKQRYAVLAADAA-KA 740
sgdakkgeknEIvaceklLqsLnlDkg...eeyrfGkTKIFFR<-*
d+k+ a ek+ +L+ D+ ++ee++ G TK+FF+
F58G4.1 741 GKDPKD-------AGEKISAALIKDGSlkqEEFQCGLTKVFFK 776
IQ: domain 1 of 1, from 792 to 812: score 13.9, E = 0.054
*->rraaikIQaawRGylaRkryk<-*
+ k+Q+a+R yla+ +yk
F58G4.1 792 GKIMAKFQCACRHYLAQCEYK 812
Myosin_tail: domain 1 of 3, from 875 to 904: score -5.3, E = 8.3e+02
*->dlerqkreleeqlkrkeselsqlslklEdE<-*
er+++++e+ +r e+e ++l + lE E
F58G4.1 875 QEERKRKDMEAENARLEAEKQALLIQLEQE 904
dNK: domain 1 of 1, from 950 to 987: score 4.1, E = 7.4
*->ekwltkynaspvlvidgdklDfvedeediknkineive<-*
+k+++++n+ ++++++++ +++ +e++++ k+++i +
F58G4.1 950 KKKIEQDNEGLKKTVSDLETTIKKQESEKQAKDHQIRS 987
Myosin_tail: domain 2 of 3, from 946 to 1077: score -25.7, E = 5.9e+04
*->LqKqKakaEKeKsqlqaEvddllaqldsitKaKlnaEKkakqlEsQl
L+KqK k+E + l++ v dl +++ K+++EK ak ++Q+
F58G4.1 946 LTKQKKKIEQDNEGLKKTVSDLETTI-----KKQESEKQAK--DHQI 985
sElqvKldElqRqlnDltsqKsRLqsENsdLtrqleEaEaqvsqlsklKs
lq + + ++ l+ K+ N L+ ++++ E +v+ l+k+K+
F58G4.1 986 RSLQDEIQSQDEVISKLNKEKKHQEEVNRKLLEDIQAEEDKVNHLNKTKA 1035
qlesQLEeAkRslEEEsReRanLqaqlrnlehDlDslrEqlE<-*
les L+e+ +lE E R R+ + q r +e +l ++E +E
F58G4.1 1036 KLESTLDELEDTLEREKRGRQDCEKQRRKVEGELKIAQELIE 1077
DNA_mis_repair: domain 1 of 1, from 1103 to 1123: score 4.9, E = 4.9
*->rllneeeilelikealkslla<-*
rl +e++++++++ ++k+lla
F58G4.1 1103 RLEDEQSLVAKLQRQIKELLA 1123
Seryl_tRNA_N: domain 1 of 2, from 1119 to 1128: score -0.1, E = 3.2e+02
*->RklqfeleeL<-*
++l+++++eL
F58G4.1 1119 KELLARIQEL 1128
[output cut off at A = 10 top alignments]