Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F58H1.1
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Query: F58H1.1 CE06025 alpha-mannosidase status:Partially_confirmed TR:Q21010 protein_id:CAB00104.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Glyco_hydro_38 Glycosyl hydrolases family 38 1163.4 0 1
CBF_beta Core binding factor beta subunit 4.9 1.4 1
ArgK ArgK protein 4.1 3.2 1
SSrecog Structure-specific recognition protein 3.7 6.1 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SSrecog 1/1 457 467 .. 208 218 .] 3.7 6.1
Glyco_hydro_38 1/1 147 785 .. 1 714 [] 1163.4 0
ArgK 1/1 824 846 .. 280 304 .] 4.1 3.2
CBF_beta 1/1 1075 1085 .. 1 11 [. 4.9 1.4
Alignments of top-scoring domains:
SSrecog: domain 1 of 1, from 457 to 467: score 3.7, E = 6.1
*->yskLfdFlnsK<-*
y+kLf + nsK
F58H1.1 457 YKKLFEYMNSK 467
Glyco_hydro_38: domain 1 of 1, from 147 to 785: score 1163.4, E = 0
*->fdplsflnllgivwkqsflieykalkkdterpklkVhvVPHsHdDvG
+d+++f+n++g+vwkq+++iey+a+k++ p+l+V+v+PHsH+D+G
F58H1.1 147 YDTWKFENPDGGVWKQGWKIEYDAEKVKSL-PRLEVIVIPHSHCDPG 192
WLkTveeYyyGsnnsIqpakvqyilnsvvtkLlenperkFiyvEisFFqr
W++T+eeYy+ +++++il+ + ++L e++e++Fiy+EisFF++
F58H1.1 193 WIMTFEEYYN--------RQTRNILDGMAKHLAEKDEMRFIYAEISFFET 234
WWdeqspakqkqqvkkLvknGqLEfvtGGWVMnDEAttHyedlIdQlteG
WW++q+++++k +vk+++++G++E+vtGGWVM+DEA+ Hy+++I++l+eG
F58H1.1 235 WWRDQADEIKK-KVKGYLEAGKFEIVTGGWVMTDEANAHYHSMITELFEG 283
HqfLeenfGsdvkPkvgWsIDPFGHSatmPyLlaqaGfdgflIqRihYad
H+++++++G++++P+++WsIDPFG S++mP+Ll+ a++++ +IqR+hY++
F58H1.1 284 HEWIQNHLGKSAIPQSHWSIDPFGLSPSMPHLLTSANITNAVIQRVHYSV 333
KqsraetktlEFmWrqswsltgstdlfthmmpfysYdiPnHtCGPdPsic
K+++a +k+lEF+Wrq + +tg++dl+ h+mpfysYdiP HtCGP+Ps+c
F58H1.1 334 KRELALKKNLEFYWRQLFGSTGHPDLRSHIMPFYSYDIP-HTCGPEPSVC 382
cwfdFkrmpggppicdykvkpepitdaNvasraelLvdqyrkkaelfRtn
c+fdF+rmp+g+++cd++++p++i+d+Nva+rae+++dqyrkk++lf++n
F58H1.1 383 CQFDFRRMPEGGKSCDWGIPPQKINDDNVAHRAEMIYDQYRKKSQLFKNN 432
vvLwplGDDFrYdentEansqfkNydkLidyiNadqrnfnvnvqygTpsd
v+++plGDDFrYd+++E+nsq++Ny+kL++y+N+ ++++nv++q+gT+sd
F58H1.1 433 VIFQPLGDDFRYDIDFEWNSQYENYKKLFEYMNS-KSEWNVHAQFGTLSD 481
YFdAlnkanltwgvkdpkfPtlsgDFFpYAdepdeGkPeYWTGYFTSRPa
YF++l++a +++g +++Pt+sgDFF+YAd++d+ YW+GYFTSRP+
F58H1.1 482 YFKKLDTAISASG---EQLPTFSGDFFTYADRDDH----YWSGYFTSRPF 524
lKrldRqlehlLrsaEilftqlsvlagqskpegryAiKleklyeqleelR
+K+ldR+l+h+LrsaEi+ft+++++ +++ e k++e+l+++R
F58H1.1 525 YKQLDRVLQHYLRSAEIAFTLANIEE-EGMVEA-------KIFEKLVTAR 566
ralaLfQHHDAiTGTakqhVvvDYaerLseglvacekviesalksllpld
ral+LfQHHD++TGTak+hVv DY+++++++l+ace+++++al+ ll++d
F58H1.1 567 RALSLFQHHDGVTGTAKDHVVLDYGQKMIDALNACEDILSEALVVLLGID 616
qstysldpsetflqcdlerlnesicpaksetsvikgssgePrfsVvvyNp
s++ +q+d++r+ne+ +p+k +v+k ++ +Vv++N+
F58H1.1 617 --------STNKMQMDEHRVNENLLPEK---RVYKIGQ-----NVVLFNT 650
LawkrtevVtipVsspnvsVtdesgkpvesqqnkgvspvwsidseyvklg
L+++r+e+++i+V+s + e+++p+++qq vspv+ +d+e+
F58H1.1 651 LSRNRNEPICIQVDS--LDAGVEADPPIKKQQ---VSPVIAYDEEK---- 691
kkgrskvsttkfeLlFlatvPPLglstYkvqvglnggkskkatpesneli
++++v++ +feL+F++++ P+++ ++++ k++t+ ++e+i
F58H1.1 692 --KTLVVKNGIFELCFMLSLGPMESVSFRLV--------KNTTTSKVEII 731
akqpkikSvilnatlktglflsrvkiqsssgdveleNeylkveFdeletG
++++ a++k+++f+s+ s+sgd++++N+ +++eFd+ e+G
F58H1.1 732 TNNA--------AEFKETSFKSS----STSGDFTVKNDKVEAEFDG-ENG 768
llksitrkqdnktvhvn<-*
++k+ t++ d+k+++ n
F58H1.1 769 MIKRATSLVDDKPIDLN 785
ArgK: domain 1 of 1, from 824 to 846: score 4.1, E = 3.2
*->rdqaeewlwtlVedellsrvkaapa<-*
++q+ +w lV++e+ ++v+a p+
F58H1.1 824 KKQSSDW--ILVKGEVVQKVFATPN 846
CBF_beta: domain 1 of 1, from 1075 to 1085: score 4.9, E = 1.4
*->MPRVVPDQrSK<-*
M RVVPD rS+
F58H1.1 1075 MHRVVPDCRSR 1085