Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F58H1.3
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Query: F58H1.3 CE06027 E-1 enzyme status:Partially_confirmed TR:Q21012 protein_id:CAB00106.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Hydrolase haloacid dehalogenase-like hydrolase 59.2 9.4e-15 1
Porphobil_deam Porphobilinogen deaminase, dipyrometha 3.3 5.4 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Hydrolase 1/1 8 241 .. 1 184 [] 59.2 9.4e-15
Porphobil_deam 1/1 474 482 .. 1 9 [. 3.3 5.4
Alignments of top-scoring domains:
Hydrolase: domain 1 of 1, from 8 to 241: score 59.2, E = 9.4e-15
*->ikavvFDkDGTLtdgkeppiaeaivealaelgl............ap
++a+++D+ GT+t +++ e +++a++++g +++ +++ +++
F58H1.3 8 FNALLLDIEGTITSI-SFVKDELFPYAFENVGNyleehydnpatqII 53
leevekllgrgl.gerilleggltaell......................
+e++++++ +++++ +++ + + ++ ++ +++ ++ +++++ +
F58H1.3 54 VEDLRHIADQQAeN-DVAVVRIREPRKEciedvtknvrhwikrdkkvyrv 102
......................ld.evlglial.dklypgarealkaLke
+++ + + ++ + + +++e++ + ++ ++yp++ ++lk
F58H1.3 103 fekrclkfnifqltpmkalqglIWeEAYQRGDVkGHVYPDVLPVLKIVEN 152
rGikvailTngdrnaeallealgla.lfdaiidsddvggvgpivvgKPkp
r i+++i ++g+ +a++ll a + + i+++ + + +i+ K +
F58H1.3 153 RKIPIYIYSSGSVHAQKLLFANSIEgDMTKILYGYFDT---NIG-LKGES 198
eifllalerlgvkpeevgpevlmvGDginDapalaaAGvgvamgngg<-*
+ ++ er +++p+e+ l+ D + a+a+++AG+ + ++ ++
F58H1.3 199 NSYTKISERIKIPPSEI----LFLTDVEAEAAAAKKAGLQTKLVVRP 241
Porphobil_deam: domain 1 of 1, from 474 to 482: score 3.3, E = 5.4
*->tirIGTRkS<-*
+i+IG+RkS
F58H1.3 474 NIQIGSRKS 482