hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F59A6.6
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Query:  F59A6.6  CE01984   ribonuclease H status:Partially_confirmed TR:Q21024 protein_id:AAK31525.1

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N
--------   -----------                                  -----    ------- ---
rnaseH     RNase H                                      172.4    7.3e-48   1
PigN       Phosphatidylinositolglycan class N (PIG-N)     3.0        2.7   1
Caulimo_VI Caulimovirus viroplasmin                       1.8        5.7   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
Caulimo_VI   1/1      18    58 ..   123   164 ..     1.8      5.7
PigN         1/1     105   114 ..     1    10 [.     3.0      2.7
rnaseH       1/1     218   363 ..     1   171 []   172.4  7.3e-48

Alignments of top-scoring domains:
Caulimo_VI: domain 1 of 1, from 18 to 58: score 1.8, E = 5.7
                   *->dWgkaksatngvpgvrykkfksleeArqaadeytkeqkvtkl<-*
                      +W+ ak+++ + p   ykkf + eeA+  +d+ + + kv+++
     F59A6.6    18    EWAEAKKQIDKFPQPVYKKFETEEEAQKYVDDRKPK-KVEST    58

PigN: domain 1 of 1, from 105 to 114: score 3.0, E = 2.7
                   *->EGldYYhtYy<-*
                      E++ Y+h Yy
     F59A6.6   105    EAIAYFHKYY    114

rnaseH: domain 1 of 1, from 218 to 363: score 172.4, E = 7.3e-48
                   *->peavtvYTDGScsgn.pgtggAGyGvlrdrgg.reeqfskplp.tTN
                       +a++vYTDG+cs n+++ ++AG+Gv+ +++++  ++f  +++  TN
     F59A6.6   218    ANAPVVYTDGACSSNgTKNAKAGWGVY-WGDDsEDNEFGPVYGaPTN 263

                   QrAEllAlieALekalKkysgliqkvnvIyTDSqYvftaHiggiteiwlh
                   +r+El+A+++A+eka++  ++  +kv+ I TDS+ +    +++++  w+h
     F59A6.6   264 NRGELIAVQKAIEKAIE--KR-LPKVV-IKTDSNLL----VQSMNI-WIH 304

                   gWelkkngwptlkGseskpiknkfkeiwelllallkqkekpvyiqwVpGH
                   gW  k++gw + + s ++++ n   +   ++ + l+qk k v++ +V+GH
     F59A6.6   305 GW--KRKGW-K-T-STGSEVLN---QDVLMKIDNLRQKLK-VKFLHVRGH 345

                   qkGipgplaeqpqGNelADkLAkqgas<-*
                    +Gi         GNe AD+LA++ga+
     F59A6.6   346 -AGI--------DGNEKADELARKGAQ    363

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