hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F59A7.8
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Query:  F59A7.8  CE11450   helicase status:Partially_confirmed TR:O16283 protein_id:AAB65339.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
SNF2_N       SNF2 family N-terminal domain              126.6    4.6e-34   2
helicase_C   Helicase conserved C-terminal domain        68.4    5.9e-18   1
zf_dskA_traR Prokaryotic dksA/traR C4-type zinc finge     4.3          7   1
DivIVA       DivIVA protein                               2.7        7.1   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
SNF2_N         1/2     147   244 ..     1   109 [.    66.2  2.8e-17
SNF2_N         2/2     271   323 ..   137   195 ..    61.0  7.6e-16
zf_dskA_traR   1/1     369   380 ..    64    75 .]     4.3        7
DivIVA         1/1     386   405 ..   363   382 .]     2.7      7.1
helicase_C     1/1     379   453 ..     1    72 []    68.4  5.9e-18

Alignments of top-scoring domains:
SNF2_N: domain 1 of 2, from 147 to 244: score 66.2, E = 2.8e-17
                   *->YQleGvnWLislyknlvkkendscglggILADEMGLGKTlQtIslla
                      +Q+ G+ WL +++ +        +++ggIL+ +MGLGKTl +Isl+
     F59A7.8   147    HQKAGLCWLLWRESQ--------PHSGGILGGDMGLGKTLSMISLIV 185

                   yllelkpkaek.rigpfLvVcPlStldnWlnEfekWapddlnivvyygdg
                   +++  ++ ++k+    +  ++P+S++++W+ E+ ++++ +  + v++++g
     F59A7.8   186 HQKAARK-TRKdAGDDA--IAPESLVHHWEAEIARRLK-QDLLSVLVYHG 231

                   nsrdqirkdellr<-*
                   n r++  kd++++
     F59A7.8   232 NRRHINPKDLKKH    244

SNF2_N: domain 2 of 2, from 271 to 323: score 61.0, E = 7.6e-16
                   *->kdkdeLkklginwdylilDEgHHrlKNedSklrkskalnklkhtrnR
                      k ++ L    i w y+ilDE+ H++KN++++   s+a +k+  +  R
     F59A7.8   271    KNSSPLAR--IAWSYVILDEA-HIIKNRNAQC--SEAACKIS-AFSR 311

                   LlLTGTPlQNnL<-*
                   ++L+GTP++Nn+
     F59A7.8   312 WCLSGTPIHNNM    323

zf_dskA_traR: domain 1 of 1, from 369 to 380: score 4.3, E = 7
                   *->CVsCQqlaElkr<-*
                      CVsC+ ++E +
     F59A7.8   369    CVSCKDIQEGGH    380

DivIVA: domain 1 of 1, from 386 to 405: score 2.7, E = 7.1
                   *->tAEvvEKDnqgedqlfeeke<-*
                      t Ev  KD+q+ +++f  ++
     F59A7.8   386    TGEVAIKDRQERVDSFNQEK    405

helicase_C: domain 1 of 1, from 379 to 453: score 68.4, E = 5.9e-18
                   *->gikvarlhGglsqeeReeilekFrngks...kvLvaTdvaarGiDip
                      g+ +++++G+   ++R+e +++F+  k + ++ L++ +++++G+++
     F59A7.8   379    GHGYTSITGEVAIKDRQERVDSFNQEKGgaqDMLLSLTAGGVGLNLI 425

                   dvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   + n+ I+ dl wnp+ + Q+++R++R+G
     F59A7.8   426 GGNHLIMVDLHWNPALEQQACDRIYRMG    453

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