Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F59D6.3
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Query: F59D6.3 CE11480 aspartyl protease status:Partially_confirmed TR:O16338 protein_id:AAB65878.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
asp Eukaryotic aspartyl protease 176.0 6.1e-49 1
Baculo_PEP_C Baculovirus polyhedron envelope protein, 6.3 1.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Baculo_PEP_C 1/1 270 290 .. 55 75 .. 6.3 1.8
asp 1/1 108 470 .. 1 420 [] 176.0 6.1e-49
Alignments of top-scoring domains:
Baculo_PEP_C: domain 1 of 1, from 270 to 290: score 6.3, E = 1.8
*->taLttlvddiktaladLdtql<-*
taL++++++ +++l++Ld++l
F59D6.3 270 TALNGTSTTMQNLLPQLDQKL 290
asp: domain 1 of 1, from 108 to 470: score 176.0, E = 6.1e-49
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*->fvriplkkekSlReklsekgvlldflvkrkyepakkltggasasskr
f i k SlRe+l g + + l+ +++ + ++++
F59D6.3 108 FS-ISVEKSGSLREQLIREGRYGQELARIQQLSTGNVSFF------- 146
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savepllnyldDaeYygtIsIGTPpQkFtVvFDTGSSDLWVPDsSvyCts
+++ D++Y + + IGTP+Q F+V FDT SS+LWV+ v+C s
F59D6.3 147 -------DHF-DEYYTAGVRIGTPAQHFQVAFDTTSSNLWVF--GVECRS 186
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systqttiAC.....kshgtFDPSkSSTyknlGttfFsIsYGdGSSasGf
+ +C+++++++ + ++ + SST+++ ++f + Y G +sG
F59D6.3 187 Q-------NChggrgRRDREYNRTASSTFVAGTSSF-NLPYDGGH-VSGN 227
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lgqDTVtvGGisvtnQqFG...latkEPGsffvtavfDGILGlGfpsiea
+g+DT +++G +++ Q FG ++ at+ G++f DG+LGlG p+++
F59D6.3 228 VGKDTAQFAGFTIQSQDFGigtAATRLFGETF-----DGVLGLGWPATAL 272
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gggssGvvaftytpVfdnlksQGLIdspaFSvYL...NsddgsaqaegGe
g + ++nl Q +d+ +F Y +++N + g ++gG
F59D6.3 273 NG---------TSTTMQNLLPQ--LDQKLFTTYFtksNMHNG---TAGGD 308
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iiFGGvDpskYtGsltwvpVtsryeegdisDsqgyWqitldsitvggsaS
i+FG++D ++ + ++++vp+ + +W ++d++++g
F59D6.3 309 IMFGAIDTTHCQSQVNYVPLA----------YNSFWSYSVDGFSIGTY-- 346
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sesttfcssgcqAIlDTGTsLlygPssivskiakavGAsese..GeYvvd
+++ + + I DT + P+ + + i+ka GA++ ++++ Y+ +
F59D6.3 347 ----SRTQT-ETTIPDTSSGWTGVPNVVLAGIVKATGATYDWnhQAYTLP 391
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CdsisslpdvtFfigGkkitVPpsayvlqnsqggssPndiClsGfqssdd
C+s+ +lpd +F+igG +++V + +yv + + + C + ++++ +
F59D6.3 392 CSSTATLPDMVFTIGGNSYNVRAVEYVVNLNLPNGQ----CALSLFGTAA 437
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ipppggplwILGDvFLRsyYvvFDdrdNnrvGlApa<-*
+ +gp wILGD+FLRsy vFD ++N r+GlA+a
F59D6.3 438 S--QSGPAWILGDNFLRSYCHVFD-FGNSRIGLAKA 470