Motif confirmation by HMMer


hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F59D6.3
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  F59D6.3  CE11480   aspartyl protease status:Partially_confirmed TR:O16338 protein_id:AAB65878.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
asp          Eukaryotic aspartyl protease               176.0    6.1e-49   1
Baculo_PEP_C Baculovirus polyhedron envelope protein,     6.3        1.8   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Baculo_PEP_C   1/1     270   290 ..    55    75 ..     6.3      1.8
asp            1/1     108   470 ..     1   420 []   176.0  6.1e-49

Alignments of top-scoring domains:
Baculo_PEP_C: domain 1 of 1, from 270 to 290: score 6.3, E = 1.8
                   *->taLttlvddiktaladLdtql<-*
                      taL++++++ +++l++Ld++l
     F59D6.3   270    TALNGTSTTMQNLLPQLDQKL    290

asp: domain 1 of 1, from 108 to 470: score 176.0, E = 6.1e-49
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->fvriplkkekSlReklsekgvlldflvkrkyepakkltggasasskr
                      f  i   k  SlRe+l   g + + l+ +++  + ++++
     F59D6.3   108    FS-ISVEKSGSLREQLIREGRYGQELARIQQLSTGNVSFF------- 146

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   savepllnyldDaeYygtIsIGTPpQkFtVvFDTGSSDLWVPDsSvyCts
                          +++ D++Y + + IGTP+Q F+V FDT SS+LWV+   v+C s
     F59D6.3   147 -------DHF-DEYYTAGVRIGTPAQHFQVAFDTTSSNLWVF--GVECRS 186

                RF xxxxxxxxxx     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   systqttiAC.....kshgtFDPSkSSTyknlGttfFsIsYGdGSSasGf
                   +       +C+++++++ + ++ + SST+++  ++f +  Y  G  +sG
     F59D6.3   187 Q-------NChggrgRRDREYNRTASSTFVAGTSSF-NLPYDGGH-VSGN 227

                RF xxxxxxxxxxxxxxxxxxx   xxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   lgqDTVtvGGisvtnQqFG...latkEPGsffvtavfDGILGlGfpsiea
                   +g+DT +++G +++ Q FG ++ at+  G++f     DG+LGlG p+++
     F59D6.3   228 VGKDTAQFAGFTIQSQDFGigtAATRLFGETF-----DGVLGLGWPATAL 272

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   xxxxxxxxxxxxx
                   gggssGvvaftytpVfdnlksQGLIdspaFSvYL...NsddgsaqaegGe
                    g           + ++nl  Q  +d+ +F  Y +++N + g   ++gG
     F59D6.3   273 NG---------TSTTMQNLLPQ--LDQKLFTTYFtksNMHNG---TAGGD 308

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   iiFGGvDpskYtGsltwvpVtsryeegdisDsqgyWqitldsitvggsaS
                   i+FG++D ++ + ++++vp+           +  +W  ++d++++g
     F59D6.3   309 IMFGAIDTTHCQSQVNYVPLA----------YNSFWSYSVDGFSIGTY-- 346

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  xxxxxx
                   sesttfcssgcqAIlDTGTsLlygPssivskiakavGAsese..GeYvvd
                       +++ +  + I DT    +  P+ + + i+ka GA++ ++++ Y+ +
     F59D6.3   347 ----SRTQT-ETTIPDTSSGWTGVPNVVLAGIVKATGATYDWnhQAYTLP 391

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   CdsisslpdvtFfigGkkitVPpsayvlqnsqggssPndiClsGfqssdd
                   C+s+ +lpd +F+igG +++V + +yv   +  + +    C + ++++ +
     F59D6.3   392 CSSTATLPDMVFTIGGNSYNVRAVEYVVNLNLPNGQ----CALSLFGTAA 437

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ipppggplwILGDvFLRsyYvvFDdrdNnrvGlApa<-*
                   +   +gp wILGD+FLRsy  vFD ++N r+GlA+a
     F59D6.3   438 S--QSGPAWILGDNFLRSYCHVFD-FGNSRIGLAKA    470



[DB home][top]