Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F59E10.2
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Query: F59E10.2 CE01596 locus:cyp-4 cyclophilin status:Confirmed SW:P52012 protein_id:CAA85417.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
pro_isomerase Cyclophilin type peptidyl-prolyl cis-tr 171.1 8.9e-49 1
Plus-3 Plus-3 domain 4.2 7.7 1
DUF498 Protein of unknown function (DUF498) 2.5 4.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Plus-3 1/1 132 153 .. 1 22 [. 4.2 7.7
pro_isomerase 1/1 279 435 .. 1 180 [] 171.1 8.9e-49
DUF498 1/1 431 457 .. 93 125 .] 2.5 4.7
Alignments of top-scoring domains:
Plus-3: domain 1 of 1, from 132 to 153: score 4.2, E = 7.7
*->dnlnllrLrRslveellkdppt<-*
+++++l L+R+++ +ll d p+
F59E10.2 132 EAVQELNLKRNHLKDLLTDVPF 153
pro_isomerase: domain 1 of 1, from 279 to 435: score 171.1, E = 8.9e-49
*->kvyFDitiggkplGrIvfeLfgdvvPkTaeNFraLctgekgfgkklf
+ ++ + ++ +G +eLf+ +vPk +eNF c ++
F59E10.2 279 NAFVRLVTN---FGPLNLELFAPKVPKACENFITHCSNG-------Y 315
YkGstFHRVIpnFMiQGGDftagnqGtGGkSIYGekFkDE.nfnlkHdrh
Y++++FHR I+nFM+QGGD ++g+ G GG+SI +F DE Hd
F59E10.2 316 YNNTKFHRLIKNFMLQGGD-PTGT-GHGGESIWDKPFSDEfISGFSHDA- 362
epGtLSMANaGdpnTNGSQFFItTvktpwLDGKHVvdfGYAVFGkVveGm
+G+LSMAN G nTNGSQFFIt ++ +LD KH+ +FG v G
F59E10.2 363 -RGVLSMANKG-SNTNGSQFFITFRPCKYLDRKHT------IFGRLVGGQ 404
dVVkkIenvgtdeyGksgdkpskeVkIadcgqle<-*
d +Ie+++t + d+p+ V+I + +
F59E10.2 405 DTLTTIEKLETE---EGTDVPMVSVVIMRAEVFV 435
DUF498: domain 1 of 1, from 431 to 457: score 2.5, E = 4.7
*->keVlekpTkeAvKeyneLksaGrRvlaiiHvTC<-*
+eV + p +eA+Ke ++++ i+++T
F59E10.2 431 AEVFVDPFEEAEKEVQAERAE------ILKKTS 457