hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file:            hmm3/seq/F59G1.3
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Query:  F59G1.3  CE26372   S. cerevisiae vacuolar sorting protein status:Partially_confirmed TR:Q21053 protein_id:AAK31535.1

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
Vps35        Vacuolar protein sorting-associated prot  1553.7          0   1
Anthrax_toxA Anthrax toxin LF subunit                     3.6        7.5   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
Anthrax_toxA   1/1     378   396 ..     1    20 [.     3.6      7.5
Vps35          1/1      24   774 ..     1  1065 []  1553.7        0

Alignments of top-scoring domains:
Anthrax_toxA: domain 1 of 1, from 378 to 396: score 3.6, E = 7.5
                   *->DslkavARelntklqiRPVe<-*
                       ++ +v+Rel + l i P++
     F59G1.3   378    EAFGKVGRELTKLLNI-PID    396

Vps35: domain 1 of 1, from 24 to 774: score 1553.7, E = 0
                   *->LRTskLSPkkYYeLYMkvfdaleLrvLeiyLkeehrkkghkLadLYE
                      +RT++LSPk+YY+LYM++++  eL++Le++L++e++++++kL++LYE
     F59G1.3    24    MRTAELSPKFYYRLYMDSMH--ELQCLEVNLVQEYAQEPAKLGNLYE 68

                   LVQYaGnIvPRLYLLITVGsVYIkskeapakeILKDLVEMCRGVQHPLRG
                   +VQYa++I+PRLYLL+T+G+V+Ik++ +++keILKDLVEMCRGVQHPLRG
     F59G1.3    69 CVQYASAIIPRLYLLVTIGGVFIKCGLGSRKEILKDLVEMCRGVQHPLRG 118

                   LFLRnYLlQcTRdkLPdigsRRvsdvgngpageLgkeepedeedgGtvsD
                   LFLRnYL+QcTR++LPd+++  +++++++++++L+k++p++++++Gtv+D
     F59G1.3   119 LFLRNYLMQCTRSVLPDFPE--TEEMLVAHNDNLSKGTPKLKPRDGTVDD 166

                   avdFVLqNFtEMNKLWVRmQaGsYvnHQGPstnsvtaCsPttaaLPatsL
                   ++dFVL+NF+EMNKLWVRmQ      HQGP
     F59G1.3   167 TIDFVLINFAEMNKLWVRMQ------HQGP-------------------- 190

                   PPaastaassRssDaatRPGsPsRssrekekRekERnELriLVGtNLVRL
                                            s+ekekRek+R+ELriLVGtNLVRL
     F59G1.3   191 -------------------------SKEKEKREKDRMELRILVGTNLVRL 215

                   SQLegvdlemYkdtVLPrILEQvVnCRDalAQeYLmEcIIQVFPDEFHLq
                   +QLe++++emY+++VLP+ILEQ+V+CRD+++QeYLmEc+IQVF+D+FHL+
     F59G1.3   216 AQLEALTEEMYVKDVLPSILEQIVSCRDPISQEYLMECVIQVFADDFHLA 265

                   TLDtlLgAcaqLqpsVnvknlliaLmdRLadYaareqEsdsevestseev
                   TL+++L+Ac+qLq++Vn+k+lliaL+dRLa+Y+++           ++e+
     F59G1.3   266 TLTEFLNACGQLQQDVNIKILLIALVDRLALYTTS-----------YNEG 304

                   lpklvdikineevqqkDeqeCPGDkviplqvelFevlsYsasnqvatVIq
                   +p                        +p++++lFe++    s+q++t+I+
     F59G1.3   305 QP------------------------APTKMQLFEIF----SEQATTLIK 326

                   srsDmPletPmmLGdiVtLlvsLlnlalkvYPdrlDYvdkvLsnivdvva
                   +r+DmPl+      diV+L+vsL++la+k+YPdr+DY+++++
     F59G1.3   327 NRPDMPLD------DIVALHVSLVSLAVKCYPDRQDYANMTF-------- 362

                   skfpsapadsseskessgvveTavasaetlthVsigtcvqiikqlslkni
                                                      ++++q+i+++++++i
     F59G1.3   363 -----------------------------------QGLRQVIEEKGVTDI 377

                   leesehLfLvLLsfqavkkeLtasttaPPnsPvtskklLsiPLisqlekY
                   ++++           +v++eLt+              lL+iP    +++Y
     F59G1.3   378 EAFG-----------KVGRELTK--------------LLNIP----IDEY 398

                   nniltllslkLqnyppVmeylDyelrksmAayivqsilknassGaGGGGW
                   +n+l+l  ++L++y++Vm+y+Dy++++++A+y++q++l++
     F59G1.3   399 KNVLRL--SQLPEYIKVMNYFDYRGQCNIASYMIQNMLEE---------- 436

                   kPtvvvtvDseskLhPPpsntlivtaDkLqVdsLfeLispLIkdqddqps
                                      +t+++++D  +Vds+f+Lis+L+kdq++q+s
     F59G1.3   437 -------------------ETVFRNQD--DVDSAFSLISSLLKDQEKQSS 465

                   derliykypdeedFaDEvffnrhDeeesWiLDPiQnlVARliHlLrnDDP
                   d+      +++e+FaDE                 QnlVARl+Hl+r+DD+
     F59G1.3   466 DS------HETEEFADE-----------------QNLVARLLHLIRADDV 492

                   rkqtmknkiqfsLeeqlkiLnsvrkhlikGGprRlkyTlPpLVfLhRRaa
                                ++q+++Lns+rk+l++GG++Rl+yTlPp++f    ++
     F59G1.3   493 -------------DSQFLLLNSARKTLGEGGRHRLRYTLPPIIF----EL 525

                   lrLarqyrrisesllKkrPdngkddgdeasaaAekarkifkfvnqCfshv
                   +rL++q++++            kd++d+++a   k+rk+f+++++
     F59G1.3   526 YRLVLQFSDM------------KDEDDKWDA---KIRKMFVCAMG----- 555

                   hsgtInaLvkvfnveapeLaLkLYLqcAeaAdqcgFenletvAYEFftqA
                      tI+aLv+  ++e++eL++kLYL++A++Ad+++Fe+++tv+YEF+++A
     F59G1.3   556 ---TIGALVS--TAELAELPMKLYLNGAITADRVPFEDNHTVVYEFVSKA 600

                   FsLYEeeisDSkaQvqaLtlIigtLqkmrvfseENydtLitkctlyASKL
                   +s++E++++DS+++v++L+l++gtL k+++++eEN+++L+++++l+A+K+
     F59G1.3   601 LSILEDDVVDSRDRVRCLHLTVGTLLKTTHLPEENWQPLANQTVLAAAKM 650

                   LKKPDQCraVylCahLFWsgqlsdedgEeGitDnslkDgkRVleCLkraL
                   +KKPDQ+r+++++a+L+W+gq+++++gE+      +k+gk+V+++L++a+
     F59G1.3   651 FKKPDQVRSLVTVAALYWHGQTLETNGEK------MKNGKKVVDILRKAA 694

                   KIAdqcldmAnaaRGslvqvqLfveiLNrYlYffihtekgnslitvkhin
                   KIA++cl+       +lvq+qLf+++L++Y+Y++   e+++s+++v+hi+
     F59G1.3   695 KIARECLE-------PLVQQQLFIQLLSAYTYYY---EDNCSEVNVDHIE 734

                   eLIelIkeeselkslevseetdliaaDdddsdnaanmfasiekhqLkYiP
                   eLI++++++  +++l+vs+e+d                 s+ek
     F59G1.3   735 ELIARTQDN--AVQLDVSAEAD-----------------SLEK------- 758

                   ihhfrntleyirsrrese<-*
                     +++++++++++++ ++
     F59G1.3   759 --QLGEAIRRLQLAKLDV    774

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