Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/F59G1.7
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Query: F59G1.7 CE19476 status:Confirmed SW:Q9TY03 protein_id:AAK31530.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Frataxin_Cyay Frataxin-like domain 100.6 5.1e-31 1
RWP-RK RWP-RK domain 4.6 8.2 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
RWP-RK 1/1 27 41 .. 1 15 [. 4.6 8.2
Frataxin_Cyay 1/1 20 133 .. 1 117 [] 100.6 5.1e-31
Alignments of top-scoring domains:
RWP-RK: domain 1 of 1, from 27 to 41: score 4.6, E = 8.2
*->kkadlsLeeLskyFd<-*
+ ad +Le Ls yFd
F59G1.7 27 TAADSTLERLSDYFD 41
Frataxin_Cyay: domain 1 of 1, from 20 to 133: score 100.6, E = 5.1e-31
*->lndsEFHrlAdqlldkieEtLedldgevGdPYtfaDiDvetngGVlT
E++ Ad +l + + +++ ++ + Dv+ + GVlT
F59G1.7 20 FSQNEYETAADSTLERLSDYFDQIAD---SFPVSEQFDVSHAMGVLT 63
ltfGengskiVINkQePlhQvWLaskvgGPyHFdykgksgeWvssRdGet
+ +++VINkQ P++Q+WL+s+ +GP+++d+ + g+W + +dGe+
F59G1.7 64 VNVSKSVGTYVINKQSPNKQIWLSSPMSGPKRYDLEE-EGKWTYAHDGEQ 112
fwdlLaqaltkaag.eevsFk<-*
+ lL ++ k + + ++F+
F59G1.7 113 LDSLLNREFRKILAdDRIDFS 133