Motif confirmation by HMMer
hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file: /home/niguts/usr02/tshini/ykclst/db/Pfam_fs
Sequence file: hmm3/seq/H06I04.3a
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Query: H06I04.3a CE23795 status:Confirmed TR:Q9N5N9 protein_id:AAF39868.1
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
FtsJ FtsJ-like methyltransferase 268.6 8e-77 1
ACPS 4'-phosphopantetheinyl transferase su 10.4 0.11 1
PBD P21-Rho-binding domain 7.9 2.2 1
TFIIA_gamma Transcription initiation factor IIA, 6.4 2.1 1
Adenylate_cyc_2 Adenylate cyclase 5.0 5 1
ATP-synt_D ATP synthase subunit D 4.2 2.4 1
Adeno_PV Adenovirus minor core protein PV 3.9 2 1
TIMELESS_C Timeless protein C terminal region 1.2 5.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
ACPS 1/1 73 91 .. 1 19 [. 10.4 0.11
FtsJ 1/1 24 202 .. 1 216 [] 268.6 8e-77
TFIIA_gamma 1/1 310 325 .. 34 49 .] 6.4 2.1
Adenylate_cyc_2 1/1 329 380 .. 161 212 .] 5.0 5
TIMELESS_C 1/1 387 401 .. 696 712 .] 1.2 5.7
ATP-synt_D 1/1 408 422 .. 189 202 .] 4.2 2.4
Adeno_PV 1/1 719 749 .. 243 279 .. 3.9 2
PBD 1/1 727 754 .. 36 64 .] 7.9 2.2
Alignments of top-scoring domains:
ACPS: domain 1 of 1, from 73 to 91: score 10.4, E = 0.11
*->vGIDieeieripaaleltg<-*
vG+D+ +i++i ++++l+g
H06I04.3a 73 VGVDLAPIKPIKNCIALQG 91
FtsJ: domain 1 of 1, from 24 to 202: score 268.6, E = 8e-77
*->yRsRaafKLleinekfkllkkregkrvlDLGaAPGgWsQVavqrlgp
yRsRaafKL ++n++f +l k + +DL+aAPGgW+QVa+q
H06I04.3a 24 YRSRAAFKLVQLNKRFEFLEK--SRATVDLCAAPGGWMQVASQFM-- 66
aKgfgetlgtendakkskvvgvDlqpiepiygdnscvitlqgDitdeetl
+++s++vgvDl pi+pi + +i lqgDit+ et+
H06I04.3a 67 -------------PVSSLIVGVDLAPIKPIKN----CIALQGDITTNETR 99
dkwirellgnlekaatpvDlVlsDgapisltvlnvtGnrdlDeylsiqLv
++ i ++l+ + + D+Vl+Dgap nv+ n+ D++++ +L+
H06I04.3a 100 AA-IKKELKTWSA-----DCVLHDGAP------NVGLNWVHDAFQQNCLT 137
laaldlaEnlevLkpgGnFVcKvFrgeeaetldllnllkklFekvkifKP
l+al+la +++L++gG+FV+KvFr+++ ++ l+++++klF++v++ KP
H06I04.3a 138 LSALKLA--TQILRKGGTFVTKVFRSND--YSCLIRVFEKLFKRVHVWKP 183
paSRpsSsEiYvVckgfkg<-*
aSR +S+Ei+vVc + +
H06I04.3a 184 AASRLESAEIFVVCEVYQK 202
TFIIA_gamma: domain 1 of 1, from 310 to 325: score 6.4, E = 2.1
*->mqVLlqFDKsmtEALa<-*
++VLl Ksm E+L+
H06I04.3a 310 LRVLLRWRKSMLETLE 325
Adenylate_cyc_2: domain 1 of 1, from 329 to 380: score 5.0, E = 5
*->eyglGedyflEiEvelelesgvafalllieelirqLglkekilrfss
+ + Ge +++EiE l +e+++++a +i eli + +ek + ++
H06I04.3a 329 KAVEGEAKEVEIEENLTEEQLEDRAMAEIDELIAKASEDEKAALKKK 375
ylell<-*
++++l
H06I04.3a 376 KKKML 380
TIMELESS_C: domain 1 of 1, from 387 to 401: score 1.2, E = 5.7
*->lkRRrLkAGfvvddDDE<-*
lkRR Lk +++d D
H06I04.3a 387 LKRRELK--MIIDGDEG 401
ATP-synt_D: domain 1 of 1, from 408 to 422: score 4.2, E = 2.4
*->effRLKkiKkkke.a<-*
e+f+LKki+k ke a
H06I04.3a 408 EVFQLKKIRKAKElA 422
Adeno_PV: domain 1 of 1, from 719 to 749: score 3.9, E = 2
*->ravkqkrrRleevledmkvepsVvPEVkVENreikqV<-*
r + ++++ e le++ +e+s E kV re+k+V
H06I04.3a 719 RKLESAKKKAEGILENDQMEHS---E-KV--REMKKV 749
PBD: domain 1 of 1, from 727 to 754: score 7.9, E = 2.2
*->ktsigItkqeqkenpeavidvldFyedtn<-*
k + gI++ +q+e++e v + +++y + +
H06I04.3a 727 KAE-GILENDQMEHSEKVREMKKVYANAT 754